PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G327059_P01 | ||||||||
Common Name | LOC100281788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HB-other | ||||||||
Protein Properties | Length: 297aa MW: 31320.8 Da PI: 6.9501 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 53 | 90 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + GRMZM2G327059_P01 53 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 90 664559******************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.05 | 31 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-9 | 34 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.23E-13 | 34 | 95 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-18 | 35 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-28 | 37 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.1E-18 | 51 | 90 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MTRGDTPRLR VLDQCIRQHK ALTQAAGMME SHPWRPQRGL PERAVTILRA WLFEHFLHPY 60 PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY VEEMKAEGQD GGGQQQVGVA 120 VANNPNPSSA GHASEAAEDD GRGDSGGGAV VDRKPTRAQL LHDAGSLASV VNIGGGSRAG 180 FGIMDHLDFD AYGGHHAGAV SLTLGLQQHD SHADGGAGGV NIAFGAPPPA HHHGYLFAPT 240 AAAAGHQMGG GVHPGLHHHV QFSGAGAGID GEAAHGQEHY RGLQGGGGFH LLRDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 5e-18 | 40 | 98 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 5e-18 | 40 | 98 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 4e-18 | 40 | 98 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 4e-18 | 40 | 98 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.43367 | 0.0 | endosperm| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G327059 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G327059_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957980 | 0.0 | EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001355027.1 | 0.0 | uncharacterized protein LOC100281788 | ||||
Refseq | XP_008675423.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675432.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675437.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675441.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675447.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675456.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675463.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Swissprot | Q38897 | 3e-61 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | B6SZ15 | 0.0 | B6SZ15_MAIZE; BEL1-related homeotic protein 14 | ||||
STRING | GRMZM2G327059_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 9e-62 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G327059_P01 |
Entrez Gene | 100281788 |
Publications ? help Back to Top | |||
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