PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G327059_P01
Common NameLOC100281788
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 297aa    MW: 31320.8 Da    PI: 6.9501
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G327059_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-0953901954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                       Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  GRMZM2G327059_P01 53 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 90
                       664559******************************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.053194IPR001356Homeobox domain
SMARTSM003896.6E-93498IPR001356Homeobox domain
CDDcd000866.23E-133495No hitNo description
SuperFamilySSF466897.27E-1835101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-2837100IPR009057Homeodomain-like
PfamPF059203.1E-185190IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTRGDTPRLR VLDQCIRQHK ALTQAAGMME SHPWRPQRGL PERAVTILRA WLFEHFLHPY  60
PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY VEEMKAEGQD GGGQQQVGVA  120
VANNPNPSSA GHASEAAEDD GRGDSGGGAV VDRKPTRAQL LHDAGSLASV VNIGGGSRAG  180
FGIMDHLDFD AYGGHHAGAV SLTLGLQQHD SHADGGAGGV NIAFGAPPPA HHHGYLFAPT  240
AAAAGHQMGG GVHPGLHHHV QFSGAGAGID GEAAHGQEHY RGLQGGGGFH LLRDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-184098563Homeobox protein Meis2
4xrm_B5e-184098563Homeobox protein Meis2
5bng_A4e-184098159Homeobox protein Meis2
5bng_B4e-184098159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.433670.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G327059
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G327059_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579800.0EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355027.10.0uncharacterized protein LOC100281788
RefseqXP_008675423.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675432.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675437.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675441.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675447.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675456.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675463.10.0BEL1-related homeotic protein 14 isoform X1
SwissprotQ388973e-61BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLB6SZ150.0B6SZ15_MAIZE; BEL1-related homeotic protein 14
STRINGGRMZM2G327059_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.19e-62TALE family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]