PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G325850_P01
Common NameLOC103630771, Zm.90729
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 284aa    MW: 29953.6 Da    PI: 8.2047
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G325850_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.1e-19162196135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C+nCgt++TplWR+gp g+k+LCnaCG++++kk++
  GRMZM2G325850_P01 162 CANCGTSSTPLWRNGPCGPKSLCNACGIRFKKKER 196
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-18156208IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14158197No hitNo description
Gene3DG3DSA:3.30.50.101.5E-16160196IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.732160192IPR000679Zinc finger, GATA-type
CDDcd002021.62E-13161194No hitNo description
PfamPF003201.4E-16162196IPR000679Zinc finger, GATA-type
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLRHCNTTTQ QQHQRHRHRQ SIPATALAPA TMPSTTFSLF SPLPCSTKAH QYAPADWFDD  60
DDSNSAVIAT PPSPSSSSTG SVDCTLSLGT PSSRLAAPKQ RPLPASSCGT MPWDVAAAAD  120
QSCCCCRRRQ GSSSSSRPSV VVNKSAVMPC AGQDPLLVDR RCANCGTSST PLWRNGPCGP  180
KSLCNACGIR FKKKERRAAA TAAMDQGGCA YVAERAQYGA AAGRAYYGSC EGPAFPCDGG  240
DVADAEAAPQ NFLAWRLDVV APAQAQAAAF AAVWPEQTTL FQYN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.907290.0ear| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G325850
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G325850_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9678500.0EU967850.1 Zea mays clone 306547 GATA transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650055.10.0GATA transcription factor 15
SwissprotB8AX511e-34GAT15_ORYSI; GATA transcription factor 15
TrEMBLA0A1D6MDM90.0A0A1D6MDM9_MAIZE; Tassel sheath1
STRINGGRMZM2G325850_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-17GATA transcription factor 19