PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G324999_P01
Common NameWRKY25, Zm.97558
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 333aa    MW: 35117.1 Da    PI: 6.8913
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G324999_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.71e-27129190159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +dDgy+WrKYGqK++ g+++pr+YYrCt++   +Cp++k+v+r+++ p +++++Y+geH+++
  GRMZM2G324999_P01 129 VDDGYSWRKYGQKDILGAKHPRAYYRCTHRnsqNCPATKQVQRTDDHPALFDVVYHGEHTCR 190
                        59***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.7124187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-28125190IPR003657WRKY domain
SuperFamilySSF1182901.31E-25128190IPR003657WRKY domain
SMARTSM007743.7E-40129191IPR003657WRKY domain
PfamPF031063.4E-27130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADAVESRGG RARLVSDLGR VQDLVRQLEL QLRAPGDAAS VDLCRRLVHQ IVALTDSSIG  60
MLRSSPDLAS PLPATGTGSP ISSDAASDHP FRAAASASAS PKKRKATARW TSQQARVSAA  120
GGSGAEGPVD DGYSWRKYGQ KDILGAKHPR AYYRCTHRNS QNCPATKQVQ RTDDHPALFD  180
VVYHGEHTCR PAAAAAGGGS KRAAQQHNPH AQAALQGLAA RLTVATATDA AALPPMTPES  240
CPVRGASSPW SLASSVASDS NGCMHQDVSP CPVPGYREWT SDGDLQEVVS SAFAAVSSVA  300
PLPVLDDEFM PLECFGFDHT FDIDTAMPSL YYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-23129190869OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G324999
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G324999_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269070.0KJ726907.1 Zea mays clone pUT3452 WRKY transcription factor (WRKY25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150829.20.0uncharacterized protein LOC100284462
TrEMBLA0A060D4850.0A0A060D485_MAIZE; WRKY transcription factor (Fragment)
STRINGGRMZM2G324999_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-32WRKY family protein