PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G323172_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 408aa    MW: 45423.1 Da    PI: 9.8508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G323172_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.97e-101221561855
                AP2  18 eIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +Ir+p   +kr+r +lg+f taeeAa a+++a+++l+g
  GRMZM2G323172_P01 122 QIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 156
                        79998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.36884164IPR001471AP2/ERF domain
SMARTSM003801.6E-15118170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-17122165IPR001471AP2/ERF domain
CDDcd000186.93E-18122166No hitNo description
SuperFamilySSF541713.66E-11122165IPR016177DNA-binding domain
PfamPF008475.8E-5127156IPR001471AP2/ERF domain
PfamPF039142.2E-5294338IPR005612CCAAT-binding factor
PfamPF061021.9E-10340393IPR009292rRNA biogenesis protein RRP36
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000469Biological Processcleavage involved in rRNA processing
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDLAHQRISS FPRRAPSSIF SPGQPAIVPH RAPRHHTTSL SPNKEETRKK KTSRGGGARG  60
IAGAGGAATG EGGARGGCPS VTTFFRGCWI AFSGNQEREA NKEMVVYLVD ASPKMFTPTT  120
TQIREPNKRT RLWLGSFATA EEAALAYDEA ARRLYGPDAF LNLPHLRASA VSSTAAHQRL  180
RWLAASARGA AAVPAYDLLN LNAQHNIYNL LAHVPLMDFQ KESTFDMWST VGLISVLTLD  240
FWFCTSDEGL SSKGENDSFK VLALIHQNVI PSMSNPSILC DFLTRSYDIG GVISVMALSG  300
LFILMTQHGL EYRKFYEKLY ALLTPVVFMA KHRSVFLQDK QLKSHPPKNV ESEILCEHIK  360
KEREAAKAGK RPYYLKKSEL RERKLMNKYN ELKLYDSAIE FVILSIDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wlc_SU2e-12261345277374Noc4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.539951e-112cell culture| ear| embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G323172
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G323172_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284071e-120KJ728407.1 Zea mays clone pUT6712 AP2-EREBP transcription factor (EREB124) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6LYK90.0A0A1D6LYK9_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G323172_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-12ERF family protein