PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G322672_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 393aa    MW: 42578.3 Da    PI: 9.4763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G322672_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-16229278255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +gr++AeIrdp     r + ++lg+f +ae Aa a++aa++ ++g
  GRMZM2G322672_P01 229 KYRGVRRRP-SGRYAAEIRDP---A-RkTPIWLGTFESAEAAAHAYDAAARTIRG 278
                        8********.7*********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-19229286IPR016177DNA-binding domain
PROSITE profilePS5103221.535229286IPR001471AP2/ERF domain
SMARTSM003801.6E-29229292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28229287IPR001471AP2/ERF domain
CDDcd000183.00E-14229286No hitNo description
PfamPF008472.8E-10229278IPR001471AP2/ERF domain
PRINTSPR003671.0E-6230241IPR001471AP2/ERF domain
PRINTSPR003671.0E-6252268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAKTARQHAN SPHVCTRDVS ITQTDLAAST SNSICINTDI DEFIYEDNDA AKGEINELDV  60
YMKDKPIRWV DPTDRNDKVP SIVEEFMADE NEYSSTIEED RRRPRQAEAA GRPTDRPWDV  120
DVVTRSGKSR LNRPTRRPGR GGPRCFSLRG AVPTKQEQPR AGLREERKRK ATRGGAGRGR  180
AKPNAESPRR RTRQGREGGR KRRRSGMRRA RPPPVPVPMT PGDAGPEVKY RGVRRRPSGR  240
YAAEIRDPAR KTPIWLGTFE SAEAAAHAYD AAARTIRGAA ARTNFPSASI SATVAPPAAP  300
AATSSHSSTV ESWSGGSGGG APVGILRAPA AEEDCRSYCG SSSSALCEDG ASGPGCGDET  360
AAPPRCSPLP FDLNVPDPAA DEMDWRCDTL LHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-162292861472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188203RRRTRQGREGGRKRRR
2199203RKRRR
3199204RKRRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.206110.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G322672
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G322672_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687030.0EU968703.1 Zea mays clone 323553 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G322672_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.17e-13ethylene response factor 8