PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G320754_P01
Common NameLOC103626050
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 333aa    MW: 37497.4 Da    PI: 10.1193
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G320754_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18361191199
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++rlv+p kfa+++  k e+   +tle++ g +++v++   k  gr+vl+ +GWk+Fv+a+ Lk  Df+vFk+dg +++ ++v +f+ 
  GRMZM2G320754_P01  36 DFHKRLVIPGKFAKHFADKVEG--SITLESLGGYTFDVQV--AKDLGRVVLQsAGWKSFVSAHYLKKMDFLVFKYDG-MSR-MKVLIFDP 119
                        45678********777555455..5***************..******999868*********************98.444.69999885 PP
2B335.22.3e-112683323799
                        EEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  37 tledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +l+  +g+sWev l++      +k +   l kGW +F+ +n L+ gD+++F+  ++++++++v+++r+
  GRMZM2G320754_P01 268 ILR-CHGNSWEVLLRVklpgaPRKCK--RLCKGWARFAGDNSLQLGDICLFEPLDTKNGTMNVHIIRR 332
                        444.39********888877523333..4889********************8888*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2125122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.80126120IPR003340B3 DNA binding domain
CDDcd100171.40E-1927118No hitNo description
SuperFamilySSF1019362.35E-2027127IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.3E-1129120IPR003340B3 DNA binding domain
PfamPF023622.5E-1637118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-17228332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-17228332IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-13231331No hitNo description
PROSITE profilePS5086311.857234333IPR003340B3 DNA binding domain
SMARTSM010190.022237333IPR003340B3 DNA binding domain
PfamPF023621.8E-9266332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRKPSKGCKE RDANYHRNDH TDDHGGKHFF KVLVGDFHKR LVIPGKFAKH FADKVEGSIT  60
LESLGGYTFD VQVAKDLGRV VLQSAGWKSF VSAHYLKKMD FLVFKYDGMS RMKVLIFDPS  120
GCEKVPPSFV AENASSGGVK REAPIGLSGS YARLPMKAPE TKRKSWKQMD RSRIIMNASS  180
SLSNSSGGMA SSEDDEAHPV PSYMLPQGTR LDRLQKKILK ERLRDICSEI PIYVCVLKKT  240
NISGHSQALE FSINYSDLYL PFKSRELILR CHGNSWEVLL RVKLPGAPRK CKRLCKGWAR  300
FAGDNSLQLG DICLFEPLDT KNGTMNVHII RRD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G320754
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G320754_P01
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644655.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A1D6GLP90.0A0A1D6GLP9_MAIZE; B3 domain-containing protein
STRINGGRMZM2G320754_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-27B3 family protein