PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G317900_P01
Common NameZm.22832
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 975aa    MW: 107538 Da    PI: 6.6036
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G317900_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.9e-23100201199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  GRMZM2G317900_P01 100 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVIFV-- 187
                        99*****************************954.4444.48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++ +r+
  GRMZM2G317900_P01 188 RDEKQQLLLGTRRA 201
                        55788889999886 PP
2Auxin_resp116.91.7e-38226309183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+++
  GRMZM2G317900_P01 226 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNIQ 309
                        79**********************************9********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.76E-4389229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-4092215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-2099191No hitNo description
PfamPF023625.4E-21100201IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66100202IPR003340B3 DNA binding domain
SMARTSM010194.3E-22100202IPR003340B3 DNA binding domain
PfamPF065073.5E-33226309IPR010525Auxin response factor
PfamPF023091.3E-9841927IPR033389AUX/IAA domain
PROSITE profilePS5174526.947842926IPR000270PB1 domain
SuperFamilySSF542771.77E-7854921No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MIKQQQQQAP PAPAPAAAPP PSACEGEKKA PPINSELWHA CAGPLVSLPP AGSLVVYFPQ  60
GHSEQFLDIK LTVNGDQYGK EALQLSELAL KQPRPQTEFF CKTLTASDTS THGGFSVPRR  120
AAEKIFPPLD FSMQPPAQEI QARDLHDNVW TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA  180
GDSVIFVRDE KQQLLLGTRR ANRQPTNISS SVLSSDSMHI GILAAAAHAA ANNSPFTIFY  240
NPRASPTEFV VPFAKYQKAL YGNQISLGMR FRMMFETEEL GTRRYMGTIT GISDLDPVRW  300
KNSQWRNIQV GWDESAAGER RNRVSIWEIE PVAAPFFICP PPFFGSKRPR QLDDESSEME  360
NLLKRAMPWL GEEICIKDPQ TQNTIMPGLS LVQWMNMNMQ QNSFANSAMQ SEYLRSLSNP  420
NMQNLGVADL SRQLNLQNQI LQQNSIQFSS PKLPQQMQLA NELSKASLPL NQIGVGTKPQ  480
EQTQDPNNLQ RQQQSMNQLL PLSQSQTNLV QAQQQLSNSQ PLSQQQTMPQ QSIQVPSRAT  540
PPPTTTVQQE SQQKLPQKHV GFTDTSHTTI PPTTSVNTIS VVGSPLMATG ATHSVVTDEI  600
PSCSTSPSTA NGNHIVQPVL GRNQLCSMIN YEKVPQSTPM SIPSSLEAVT ATPRSIKELP  660
KLNSNVKQSV MASKLPNAGH VAQNLTNNAP PTDYPETASS ATSVWLSQAD GLLHHSFPMS  720
NFNQQQQMFK AAAPETDIQG ADPSNNTLFG INGDGQLGFP MGADDFLSNG IDASKYQGHI  780
STDIDGNYRI SKDGQQEISS SMVSQSFGAS DMAFNSIDSG MNDGGFVNRT SWPPAPPLKR  840
MRTFTKVYKR GAVGRSIDIS QFSGYDELKH ALARMFSMEG QLEERQRIGW KLVYKDHEDD  900
ILLLGDDPWE EFVNCVKCIR ILSPQEVQQI SLDGDLGNNI LPNQACSSSD GGNAWRARCD  960
QNSGNPSTGS YDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1362933047388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.228320.0embryo| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G317900
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G317900_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645045.10.0auxin response factor 19 isoform X2
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A1D6GVF50.0A0A1D6GVF5_MAIZE; Auxin response factor
STRINGGRMZM2G317900_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-171auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]