PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G317450_P01 | ||||||||
Common Name | LOC100279738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 311aa MW: 34250 Da PI: 10.1514 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.9 | 6.5e-17 | 173 | 222 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN+++e LrellP+ ++K +Ka+ L +++eYI+ Lq GRMZM2G317450_P01 173 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEVIEYIRFLQ 222 889*************************7....7*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-18 | 169 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-22 | 170 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.66 | 171 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-14 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-16 | 173 | 226 | No hit | No description |
SMART | SM00353 | 3.8E-12 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MQLFQGEKPA HDFLSLHTGG GPSSPVQQQH PAQGYESGAH SSLKPMKLDR RRRGGGGGGA 60 IDMAPSSGLE SDSEEHVLPG GVGTFSIRQV ASATRSRGEA AGHGVVSGAF PPAVHVSRTE 120 EGPPHGAESG ARAHSGPLAM WQDSGVDQRS RGARGGEGRS SGSSADQGPS TPRSKHSATE 180 QRRRTKINDR LEILRELLPH GDQKRDKASF LLEVIEYIRF LQEKVQKYES AQPEKNHEDS 240 SMPWAKVYYR SCWKNTEVIP HARAHTHTKE KRNATWKHGA HDISMITNFF VLFHGLAEYH 300 PRRRISTFHE R |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.31616 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G317450 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G317450_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054790 | 0.0 | BT054790.1 Zea mays full-length cDNA clone ZM_BFb0052O12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146169.2 | 0.0 | uncharacterized protein LOC100279738 | ||||
TrEMBL | A0A1D6HJ35 | 0.0 | A0A1D6HJ35_MAIZE; Transcription factor BIM3 | ||||
STRING | GRMZM2G317450_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.1 | 3e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G317450_P01 |