PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G317317_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 389aa    MW: 42960.5 Da    PI: 7.3568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G317317_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-06149177331
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                        + h ++Er+RR+++ + f +L +++P ++
  GRMZM2G317317_P01 149 QEHVIAERKRREKMQQQFVTLATIVPDLT 177
                        5799**********************974 PP
2HLH11.10.000772462762355
                        HHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  23 LrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Lr+l P  +   +++  +K++ L  ++eY+k+L+
  GRMZM2G317317_P01 246 LRTLAPRiL---TQPDQDKISLLGSTIEYVKHLE 276
                        999999999...9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.21E-11150174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-13150176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-4152281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.21E-11253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-13255287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDELNKWRHL HPDPEDELAY MYRQQEEDHA GMQQQHHHFA ERLPEQQQYY TPPPPAAAPP  60
TSSSPFLPRL HHTSSFPGFG DPAVPPRLPF RPAKEEPGQP SSLSNRILSF GGQPPSTLNF  120
SGSDWTEAGV EAVQQMPPER RSRMHWNTQE HVIAERKRRE KMQQQFVTLA TIVPDLTKMG  180
LAGGGIHALI KHTFWGIPAG SGTVASANVI TKSGISPNGS HQKAGNPIRV PDGSAHVRNW  240
WSIPGLRTLA PRILTQPDQD KISLLGSTIE YVKHLEEKVK ALEGRRERRT YEPTDFESKC  300
HISTDIDASS SSGSAFGAGG FNPTVDASIH GDTVLLKICC KERRGVLVMI ISEIENQGLA  360
IINTSVLPFT DSCLNITITA KAMHSLSHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159ERKRRE
2155160RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G317317
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G317317_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653082.11e-116transcription factor bHLH18
TrEMBLA0A1D6JUB01e-115A0A1D6JUB0_MAIZE; Transcription factor bHLH18
TrEMBLA0A317YAA21e-114A0A317YAA2_MAIZE; Transcription factor bHLH25 (Fragment)
STRINGGRMZM2G317317_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Representative plantOGRP1197445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-12bHLH family protein