PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G317287_P01
Common NameZEAMMB73_658359
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 606aa    MW: 66692.2 Da    PI: 8.0803
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G317287_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.91.4e-81154162374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        v +L++cA +vs+g+le+a+  L++++ l+s ++ p+qRl      ALa+rl+  +++l+ al   ++  ++s  + +a+++f  +sP+l  
  GRMZM2G317287_P01  15 VPALYQCAAHVSEGSLEKANFSLSEIKRLSSIADGPLQRLP----DALARRLLLPCEGLAGALIHPSDYFERSGGVRSARRTFAGLSPFLHA 102
                        668************************************96....79*******9*****999555555567777789************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfd....isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                        ++ ++N+aIlea+e e+ v i+D++    +s++ QW+ Ll+ +   +++pp++R+T+v++    + + +  ++  Lak A++l++pf+fn +
  GRMZM2G317287_P01 103 AFAATNRAILEAMEDEKVVRIVDLSccsaASHPCQWLDLLHGFVHGRRPPPEVRLTVVHD----DDDFVAGMRAALAKEAHRLNIPFQFNHV 190
                        ************************84444699****************************....99*************************9 PP

               GRAS 182 vakrledleleeL........rvkpgEalaVnlvlqlhrll.......................desvsleserdevLklvk.slsPkvvvv 241
                        ++ r   le+ +L         vk gEa+a + +                              + + +++ +  ++L +v  +l+P +vvv
  GRMZM2G317287_P01 191 LVVRGGGLETMDLrgdfrdvlGVKYGEAVALQNMATTAAAQlkhmacssrspasilnyprtpspQCQCQVPRPLASFLGAVHhRLKPSIVVV 282
                        8888888877777443333335666888888776655555578999***************999666677777888****9637******** PP

               GRAS 242 veqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                        +eq+a+hn+++F +rf+eal yy+alfdsl ++ +++++ +r+ vEr++lg+ei+nv+ cega+r erhe+l++W + ++++GF+ vpls +
  GRMZM2G317287_P01 283 MEQDANHNAPPFSARFAEALGYYAALFDSLdAVAAASAAGDRAQVERMVLGEEIKNVLLCEGASRLERHERLSQWAMYMDASGFRRVPLSFR 374
                        ******************************445555566***************************************************** PP

               GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        a  + +l l+ +++   r + es+ l+lgW + +L+svSaWr
  GRMZM2G317287_P01 375 AIRESELKLASFGMSACRYQVESDGLLLGWGSTRLYSVSAWR 416
                        *************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.8511396IPR005202Transcription factor GRAS
PfamPF035144.8E-7915416IPR005202Transcription factor GRAS
Gene3DG3DSA:1.10.620.204.8E-69433604IPR012348Ribonucleotide reductase-related
PfamPF034058.7E-66434599IPR005067Fatty acid desaturase, type 2
SuperFamilySSF472408.43E-44435603IPR009078Ferritin-like superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006631Biological Processfatty acid metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0045300Molecular Functionacyl-[acyl-carrier-protein] desaturase activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAPPSVQEQE LVLLVPALYQ CAAHVSEGSL EKANFSLSEI KRLSSIADGP LQRLPDALAR  60
RLLLPCEGLA GALIHPSDYF ERSGGVRSAR RTFAGLSPFL HAAFAATNRA ILEAMEDEKV  120
VRIVDLSCCS AASHPCQWLD LLHGFVHGRR PPPEVRLTVV HDDDDFVAGM RAALAKEAHR  180
LNIPFQFNHV LVVRGGGLET MDLRGDFRDV LGVKYGEAVA LQNMATTAAA QLKHMACSSR  240
SPASILNYPR TPSPQCQCQV PRPLASFLGA VHHRLKPSIV VVMEQDANHN APPFSARFAE  300
ALGYYAALFD SLDAVAAASA AGDRAQVERM VLGEEIKNVL LCEGASRLER HERLSQWAMY  360
MDASGFRRVP LSFRAIRESE LKLASFGMSA CRYQVESDGL LLGWGSTRLY SVSAWRPNKS  420
GTRECAQRRA AISQARATFV SHARTARLAG LHGDACLAKL CGVIAADERR HEAAYTRASD  480
RAFEEDPDGM VRALAAVMRA KVTMPGELMA DGRDDRLFDH FSAVARRSGV YTAADYADMV  540
EHFVRRWKVA ELDAGLSGEG RRAQDYVCGL PRKIRRMEEL AQDRAAQMEA QSVCFSWVFD  600
RPVRIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1oq4_E8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oq4_F8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oq7_A8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oq7_B8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oq7_C8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oq7_D8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oq7_E8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oq7_F8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oq9_A8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oqb_A8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oqb_B8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oqb_C8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oqb_D8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oqb_E8e-65434605195363Acyl-[acyl-carrier protein] desaturase
1oqb_F8e-65434605195363Acyl-[acyl-carrier protein] desaturase
2xz0_A8e-65434605195363ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, CHLOROPLASTIC
2xz0_B8e-65434605195363ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, CHLOROPLASTIC
2xz0_C8e-65434605195363ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, CHLOROPLASTIC
2xz1_A8e-65434605195363ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, CHLOROPLASTIC
2xz1_B8e-65434605195363ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, CHLOROPLASTIC
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G317287
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G317287_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696410.0EU969641.1 Zea mays clone 333466 acyl-desaturase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301260.10.0scarecrow-like protein 3
TrEMBLA0A1D6IQZ00.0A0A1D6IQZ0_MAIZE; Scarecrow-like protein 3
STRINGGRMZM2G317287_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP1616933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.18e-54scarecrow-like 3