PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G317160_P01 | ||||||||
Common Name | EREB26, LOC100384463 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 428aa MW: 46321.9 Da PI: 8.0397 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.4 | 4e-14 | 147 | 206 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g GRMZM2G317160_P01 147 SIYRGVTRHRWTGRYEAHLWDnTCRkEGqkRKgRQVYLGGYDKEDKAARAYDIAALKYWG 206 57*******************554454475337**********99************987 PP | |||||||
2 | AP2 | 47.7 | 3.7e-15 | 249 | 301 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+ +++ grW A+I + +k +lg+f t++eAa+a++ a++k++ge GRMZM2G317160_P01 249 SIYRGVTKHHQHGRWQARIGRVAG---NKDLYLGTFATEQEAAEAYDIAALKFRGE 301 57****************988532...5**********99**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-11 | 147 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-20 | 147 | 214 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-17 | 147 | 215 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.124 | 148 | 214 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-16 | 148 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-25 | 148 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 149 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-17 | 249 | 309 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.3E-10 | 249 | 301 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.27E-23 | 249 | 310 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-18 | 250 | 308 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-32 | 250 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.676 | 250 | 308 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 290 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MSPPTNGAIS LAYAPSMMLG AGALTNPPLL PFDGFTDEDF LASADAALLG EAGTDQTLLL 60 LPSCPGANCC GGSSSDQGLG ALACEVTTAG SFSLLGQPAP GQVSWEVTTA VAADRNTFSR 120 ARDPAPSPPP SPALPLVQTT SQSQRTSIYR GVTRHRWTGR YEAHLWDNTC RKEGQKRKGR 180 QVYLGGYDKE DKAARAYDIA ALKYWGDNAT TNFPRENYIR EIQDMQNMNR RDVVASLRRK 240 SSGFSRGASI YRGVTKHHQH GRWQARIGRV AGNKDLYLGT FATEQEAAEA YDIAALKFRG 300 ENAVTNFEPS RYNLLAIAQR DIPILGRKLI QKPAPEAEDQ AALSARSFSQ SQQSSNSLPP 360 YFLTNLLQPL PSQHSLAQAL PSYNNLGFGE PSLYWPCPCG DPGEQKVQLG SKLEIVDGLV 420 QLANSAAN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.36913 | 0.0 | meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G317160 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G317160_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT070198 | 0.0 | BT070198.1 Zea mays full-length cDNA clone ZM_BFc0189L07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170466.1 | 0.0 | uncharacterized protein LOC100384463 | ||||
TrEMBL | C0PPH9 | 0.0 | C0PPH9_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G317160_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-107 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G317160_P01 |
Entrez Gene | 100384463 |