PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G315506_P01
Common NameLOC100502477, ZEAMMB73_797016
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 357aa    MW: 37640.6 Da    PI: 8.4392
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G315506_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.6e-29150199251
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  GRMZM2G315506_P01 150 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 199
                        9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-25147200IPR009057Homeodomain-like
SuperFamilySSF466891.56E-13148203IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-21150200IPR006447Myb domain, plants
PfamPF002491.3E-5151199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009054anatomyinflorescence bract
PO:0020136anatomyear inflorescence
PO:0007001developmental stageearly whole plant fruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPARA TSHHHGAALS ARLLAAAAGG SVGGGNGVPG NPAAAMAPSL  60
QVPIPIPLQL PLPMPPNAAA MLRPIRGVPL YQHPHTHAVP PTFPPHAAGA GPCFCEPCHV  120
AAGAWRRAGC GFGARVAGLF PPAKRAARAP RMRWTSTLHA RFVHAVELLG GHERATPKSV  180
LELMDVKDLT LAHVKSHLQL VVLASKWKKM YRTVKNTERP AASSDQADGF ESGSSSAGEI  240
CDDDNSSLDL HGTDGRRPES SSAVRHGRLT ACNDHGSSTG AHGGALWNSS SREDWAGFPS  300
DSNTGSMSMH SRSLKDQTMQ SKSLEILSDM NSSCVSETTS CASELNLEFT LGPRIRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-14151199351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14151199351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14151199351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14151199351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G315506
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G315506_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0883110.0BT088311.1 Zea mays full-length cDNA clone ZM_BFc0129I15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183884.10.0uncharacterized protein LOC100502477
TrEMBLC4JBW40.0C4JBW4_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G315506_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-32G2-like family protein