PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G314660_P01
Common NameZm.26981
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 717aa    MW: 75577 Da    PI: 7.405
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G314660_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.16.5e-201691787
           trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                       m+ ++r+++lk+plW++vs+++++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  GRMZM2G314660_P01  1 MDAAFREAALKGPLWDQVSRRLEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 69
                       6889*************************************************97..66667******985 PP
2trihelix110.69.9e-35407492187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r+eme+r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  GRMZM2G314660_P01 407 RWPKAEVHALIQLRTEMETRYQDSGPKGPLWEDISSGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 492
                        8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.22E-15149No hitNo description
PfamPF138373.6E-14470No hitNo description
PROSITE profilePS500904.8091542IPR017877Myb-like domain
SMARTSM007176.0E-4404466IPR001005SANT/Myb domain
PROSITE profilePS500907.259406464IPR017877Myb-like domain
CDDcd122035.11E-31406471No hitNo description
Gene3DG3DSA:1.10.10.605.3E-4407463IPR009057Homeodomain-like
PfamPF138374.2E-24407493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MDAAFREAAL KGPLWDQVSR RLEAMGYKRS AKKCREKFEN VDKYYKRTKD GRAGRGDGKA  60
YRFFSELEAL HGAAPAVASL ARRPVAMAPA PPPPVTALVG ASTGMAPTAL HAEPPPMPQP  120
AAPAPTGTGT GTGTGSVTAT IAPPAGAAAS DAAAAAACMM TPGDVSFSSG SDGEDTDETG  180
GGSGKRKRDG GEDEDGFGGS ISSKMMRFFE GLMRQVMERQ EEMQRRFIEA IERREQDRMI  240
REEAWRRQEV ARLAREQDAL AQERAMAVSR DAAVVSFIQR VTGQNIPMPV PSPVAPPPAF  300
ITALTHAPPL QPTPVASAAP AAPAPAQAQH QPPPPAHQLS PKKPQTVMPL TPQAPQQPQV  360
QPRQAPSPSP SPATHPQGNK EIVVRAPPPA ESQDTAGFGG GAPSPSRWPK AEVHALIQLR  420
TEMETRYQDS GPKGPLWEDI SSGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPED  480
SKTCPYYHQL DALYRSKALA SSSSGPGAAP ALPPPPPPPQ RPDQQAAAAA PPVTVVLAPV  540
PLSQTGPHGN GNGNGNGCAG RGSSDNGGGG SGGMQKQQAS NGGVAAARFS AVDGAGGNGV  600
ATNKREEGIV RKEEAVAAET RPQPVSMNDS YVDSDSSMDD DEEDDFYDDD DEGDVGDGGN  660
NKMQYEIQFQ QQHQHVQPQQ QQNQSGGGVR PNASGSAGAG AGPAATTSGS FLTMVHH
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G314660
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G314660_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9516590.0EU951659.1 Zea mays clone 988816 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400490.10.0trihelix transcription factor GTL1
TrEMBLA0A1D6JL370.0A0A1D6JL37_MAIZE; Trihelix transcription factor GT-2
STRINGGRMZM2G314660_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-48Trihelix family protein