PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G312419_P01 | ||||||||
Common Name | ZEAMMB73_255027, Zm.22100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 32320.8 Da PI: 7.5442 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 57 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ GRMZM2G312419_P01 57 RGHWRPAEDAKLKELVAQFGPQNWNLIAERLD-GRSGKSCRLRWFNQ 102 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 109 | 153 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + GRMZM2G312419_P01 109 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 153 678*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.923 | 52 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-14 | 56 | 105 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-28 | 57 | 150 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-16 | 57 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 58 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-13 | 60 | 101 | No hit | No description |
PROSITE profile | PS51294 | 27.25 | 104 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-16 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 109 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 111 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.98E-8 | 120 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAAFFGAAPP PALASFRHEE EQHQDAAEEV YHVDDVDEGS GDGRGHGGAG QGKLCARGHW 60 RPAEDAKLKE LVAQFGPQNW NLIAERLDGR SGKSCRLRWF NQLDPRINRR AFSEEEEERL 120 LAAHRAYGNK WALIARLFPG RTDNAVKNHW HVLMARRQRE HSGALRRRKP SSTSPSPAPA 180 PAPHLAPVVV LHHHHHYAGG SPPMPPLHAA DAHTQYTAAA ADTRAHSGGE SDETASTCTT 240 DLSLASAAPC FYQSGYDVAP RAAAFAPSAR SAFSAPPATA RSDDKVSLPF FDFLGVGAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 55 | 157 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.22100 | 0.0 | meristem| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G312419 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G312419_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964855 | 0.0 | EU964855.1 Zea mays clone 282116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344652.1 | 0.0 | uncharacterized protein LOC100501819 | ||||
Swissprot | Q5NBM8 | 3e-96 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | K7USW0 | 0.0 | K7USW0_MAIZE; Putative MYB DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G312419_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 2e-55 | myb domain protein 117 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G312419_P01 |