PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G312201_P02
Common NameZm.10304
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 868aa    MW: 96251.2 Da    PI: 8.056
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G312201_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31.1e-51211481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yL++kv+++++++  +i+evd+yk++PwdLp+k+  ++kewyfF++rd+ky++g+r+nr++ +gyWkatg dk++
  GRMZM2G312201_P02  21 LPPGFRFHPTDEELVVYYLCRKVARQQVPV-PIIAEVDLYKFDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRTAGKGYWKATGADKSI 111
                        79****************************.88***************8877899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +   ++++ g+kk Lvfy+g+ap+g+ktdW+mheyr+
  GRMZM2G312201_P02 112 VPMgSTRAAGIKKALVFYSGKAPRGVKTDWIMHEYRV 148
                        99866778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-6117174IPR003441NAC domain
PROSITE profilePS5100560.34121174IPR003441NAC domain
PfamPF023652.9E-2622148IPR003441NAC domain
PROSITE profilePS513755.437444474IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.829478512IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.917513543IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.2E-4515545IPR002885Pentatricopeptide repeat
PfamPF015350.0011517544IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.659544574IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.7E-5546576IPR002885Pentatricopeptide repeat
PfamPF015351.6E-4546575IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.797575609IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-6577611IPR002885Pentatricopeptide repeat
PfamPF015350.0023577606IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.506645675IPR002885Pentatricopeptide repeat
PfamPF015350.0017650675IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.43677711IPR002885Pentatricopeptide repeat
PfamPF130411.8E-12677724IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.1E-8679712IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.75712747IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.831748778IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.93780814IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MAMVAAAEGS GRRDAEAELN LPPGFRFHPT DEELVVYYLC RKVARQQVPV PIIAEVDLYK  60
FDPWDLPEKA LFGRKEWYFF TPRDRKYPNG SRPNRTAGKG YWKATGADKS IVPMGSTRAA  120
GIKKALVFYS GKAPRGVKTD WIMHEYRVAQ ADHTLGKKGS QKLDEWVLCR LYNKRNNWDK  180
VKVEEQELEA APRRQHHLQS AEDSMSNSFQ THDSDIDNVF ELQNCYGNNM VQGQAMTPRN  240
DIGVVTVKED NDWFTDMNLD DLQASYNMAH TTNHSTVTFQ SFFLKLHPFC PHRTTGDAHV  300
RAAGQCGPIL HGLNLGSHEP SAPHSVTHQP PLRDEVSRVT QTAVLRLASG DLRPPSPAAV  360
LCHGPWTVVR QQQGSSLCPT ACPPPASATS ASGLWAPVSR LCPRRSSSGL RHQALSYSST  420
APVPATARSS TPPSRTALKV FDQSPAPWRA FLKAYSHGPF PLEALHLFKH ARQHLADDTF  480
VFTFVLKACA GLGWHRAGAQ LHALVVQKGF EFHAYVHTAL INVYVMSRCL VEARKVFDEM  540
PVKNVVSWNV MITGFAGWGE VEYARLLFDQ MPCRNVVSWT GLIDGYTRAC LYAEALTLLR  600
HMMAGGISPS EITVLAVIPA ISNLGGILMG EMLNGYCEKK GIMSDARVGN SLIDLYAKIG  660
SVQNSLKVFD EMLDRRNLVS WTSIISGFAM HGLSVEALEL FAEMRRAGIK PNRITFLSVI  720
NACSHGGLVE QGLAFFKSMV YEYNIDPEIK HFGCIIDMLG RAGRLCEAEQ IIEGLPMEVN  780
VTVWRILLGC CSKYGEVAMG ERAIKMISDL ERESGGDFAV LSNVLTELGR FSDAEQARKL  840
LDQRKIVKLQ EAGEVNLMSS SCSSLTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-90131807174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.103040.0cell culture| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G312201
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G312201_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2835370.0KP283537.1 Zea mays NAC protein (Zma29150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6N8W30.0A0A1D6N8W3_MAIZE; Pentatricopeptide repeat-containing protein mitochondrial
STRINGGRMZM2G312201_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-79NAC domain containing protein 32