PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G311316_P03

Common Name

LOC100273685, ZEAMMB73_867664

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NF-YC

Protein Properties

Length: 251aa MW: 28028.7 Da PI: 5.0743

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G311316_P03	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	170.3	2.3e-53	74	178	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql+ fw++q i++a+dfk h+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+ GRMZM2G311316_P03 74 QLREFWTTQmdeIKQANDFKIHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIY 165 89****966667899*********************************************************************** PP NF-YC 90 dflvdivprdelk 102 dflvdi+prde+k GRMZM2G311316_P03 166 DFLVDIIPRDEMK 178 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.27E-31	54	168	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-36	87	160	IPR009072	Histone-fold
Pfam	PF00808	7.6E-21	96	159	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEPSSQPQPM MGVGSQPYPA AAPYVPVPGS LAVPPGSQPA AAFPNPTQLS AQHQMVYQQA 60 QQFHQQLQQQ QEQQLREFWT TQMDEIKQAN DFKIHTLPLA RIKKIMKADE DVRMISAEAP 120 VVFAKACEVF ILELTLRSWM HTEENKRRTL QKNDIAAAIT RTDIYDFLVD IIPRDEMKEE 180 GLGHNPIVGL PPAMGAPADH GSHPYYYVPA QQVQGAGMMY GGQQGHPVTY MWQTPQGQAA 240 EPPEEEQQQS A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-55	81	174	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	152	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.38583	0.0	cell culture\| ovary\| pollen\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G311316

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G311316_P03

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041629	0.0	BT041629.1 Zea mays full-length cDNA clone ZM_BFb0020N05 mRNA, complete cds.
GenBank	EU970712	0.0	EU970712.1 Zea mays clone 349260 nuclear transcription factor Y subunit C-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141569.1	0.0	nuclear transcription factor Y subunit C-2
Refseq	XP_008661624.1	0.0	nuclear transcription factor Y subunit C-2 isoform X1
Refseq	XP_008661625.1	0.0	nuclear transcription factor Y subunit C-2 isoform X1
Refseq	XP_008661626.1	0.0	nuclear transcription factor Y subunit C-2 isoform X1
Refseq	XP_008661627.1	0.0	nuclear transcription factor Y subunit C-2 isoform X1
Refseq	XP_008661628.1	0.0	nuclear transcription factor Y subunit C-2 isoform X1
Swissprot	Q655V5	1e-107	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	B4FWZ1	0.0	B4FWZ1_MAIZE; Nuclear transcription factor Y subunit C-2
TrEMBL	K0DCM0	0.0	K0DCM0_MAIZE; CA5P5 transcription factor (Fragment)
STRING	GRMZM2G311316_P03	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-66	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	GRMZM2G311316_P03
Entrez Gene	100273685

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]