PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G311059_P01 | ||||||||
Common Name | LOC541747, ZEAMMB73_789348, Zm.13880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 188aa MW: 20693.7 Da PI: 12.2974 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.6 | 2.2e-11 | 29 | 74 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd l++ v +G+++W++I ++ + Rt+k+c++rw + GRMZM2G311059_P01 29 KGHWTAEEDAVLLRHVLVHGPRDWSSIRSKGFLPRTGKSCRLRWVN 74 789***********************97763367**********87 PP | |||||||
2 | Myb_DNA-binding | 42.6 | 1.4e-13 | 85 | 125 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ +++ +q+G++ W++I+ +++ gRt++++k++w GRMZM2G311059_P01 85 KFSAEEERVVLELQAQFGNK-WARISTYLP-GRTDNDVKNFWS 125 79******************.*********.***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.323 | 24 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-19 | 25 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-27 | 27 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-10 | 28 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-10 | 32 | 76 | No hit | No description |
Pfam | PF13921 | 2.4E-11 | 32 | 82 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 78 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.97 | 81 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-12 | 85 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.02E-10 | 85 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009074 | anatomy | style | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MARAPGGARR RGGGSGRRGQ ADGGQAVRKG HWTAEEDAVL LRHVLVHGPR DWSSIRSKGF 60 LPRTGKSCRL RWVNKLRPDL KTGCKFSAEE ERVVLELQAQ FGNKWARIST YLPGRTDNDV 120 KNFWSTRQKR IARLLGTPPR GRSSRSRSRS AKGKAPVVAS SLESRPATVV KPLHVAAHIA 180 RSSLSGTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 27 | 130 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G311059 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G311059_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF099415 | 9e-67 | AF099415.1 Zea mays clone ZmMYBIP102 R2R3MYB-domain protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401111.1 | 1e-117 | probable transcription factor MYB58 | ||||
Swissprot | Q0JB89 | 8e-69 | MYB58_ORYSJ; Probable transcription factor MYB58 | ||||
TrEMBL | A0A1D6JD85 | 1e-116 | A0A1D6JD85_MAIZE; Putative MYB DNA-binding domain superfamily protein | ||||
TrEMBL | A0A3L6G9F6 | 1e-116 | A0A3L6G9F6_MAIZE; Transcription factor GAMYB | ||||
STRING | GRMZM2G311059_P01 | 1e-132 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5700 | 33 | 57 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 9e-62 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G311059_P01 |
Entrez Gene | 541747 |
Publications ? help Back to Top | |||
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