PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G310368_P01 | ||||||||
Common Name | Zm.19143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 24428.5 Da PI: 9.0778 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAaka++ a+++++g+ GRMZM2G310368_P01 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAAKAYDSAAREFRGA 83 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.01E-30 | 32 | 90 | No hit | No description |
Pfam | PF00847 | 4.0E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-37 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.999 | 33 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.5E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAPRVADKSP LPPATGLGLG VGGGVGGVGM GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL 60 GTYDTAEEAA KAYDSAAREF RGAKAKTNFP FPSQCSVASG AAGSASSNST VDSSGGGSGC 120 GIQAPMQAMP LPPALDLDLF HRAAAVNAVS TGMRFPFKGY PVACPTPQQY FFYEQAAAAA 180 SGYRMLKVAP PAVTVAAVAQ SDSDSSSVVD HSPSPPAVTA NKVGFELDLN WPPPAEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 31 | 91 | 3 | 64 | ATERF1 |
3gcc_A | 2e-22 | 31 | 91 | 3 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.19143 | 0.0 | aerial organ| ear| meristem| ovary| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G310368 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G310368_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ244357 | 0.0 | DQ244357.1 Zea mays clone 5439 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149766.2 | 1e-171 | uncharacterized protein LOC100283393 | ||||
TrEMBL | A0A1D6N9I7 | 1e-170 | A0A1D6N9I7_MAIZE; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A3L6FGL8 | 1e-170 | A0A3L6FGL8_MAIZE; Ethylene-responsive transcription factor 4 | ||||
STRING | GRMZM2G310368_P01 | 1e-171 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 7e-24 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G310368_P01 |