PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G309731_P01 | ||||||||
Common Name | Zm.143472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 16750.5 Da PI: 10.8847 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 4.8e-21 | 11 | 62 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a++ a+++++g+ GRMZM2G309731_P01 11 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFATAEDAARAYDDAALRFRGA 62 68********.**********64....55*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-14 | 11 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.44E-18 | 11 | 71 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.3E-33 | 12 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-23 | 12 | 70 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-36 | 12 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.146 | 12 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-12 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-12 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
HAPATEPQRR PRYRGVRQRP WGKWAAEIRD PVKAARVWLG TFATAEDAAR AYDDAALRFR 60 GAKAKLNFPA NAGHGTAAAF QPRYRGQHRP GTPSAAAAPV GCHEEPSSSF PDLGQYARIL 120 QSGGGDLDLQ AAFAGGVAPA GRSSTSAASA SASSPWQGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-24 | 13 | 75 | 6 | 69 | ATERF1 |
3gcc_A | 2e-24 | 13 | 75 | 6 | 69 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G309731 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen grains. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G309731_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120527 | 3e-66 | AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence. | |||
GenBank | AC147812 | 3e-66 | AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence. | |||
GenBank | AP014967 | 3e-66 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 3e-66 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023157088.1 | 1e-108 | ethylene-responsive transcription factor ERF113, partial | ||||
Swissprot | Q9LYU3 | 9e-31 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A1D6KKI5 | 1e-108 | A0A1D6KKI5_MAIZE; Ethylene-responsive transcription factor ERF112 | ||||
STRING | GRMZM2G309731_P01 | 1e-109 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4447 | 35 | 71 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 4e-18 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G309731_P01 |