PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G307823_P01
Common NameLOC103629098, LOC103637780, ZEAMMB73_845650, Zm.13736
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-X1
Protein Properties Length: 1103aa    MW: 118380 Da    PI: 8.171
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G307823_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.58.7e-06374391118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H C+  CH+GpC++C
  GRMZM2G307823_P01 374 CGNHACKDMCHPGPCGEC 391
                        ****************** PP

2zf-NF-X118.93.3e-06432449118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG H+C+  CHeG+CppC
  GRMZM2G307823_P01 432 CGVHRCKVNCHEGECPPC 449
                        ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.18E-7128202No hitNo description
PROSITE profilePS500168.502135198IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590138195IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.934138196IPR001841Zinc finger, RING-type
CDDcd060082.16E-4229293No hitNo description
SMARTSM004380.023255273IPR000967Zinc finger, NF-X1-type
PfamPF014228.2257272IPR000967Zinc finger, NF-X1-type
CDDcd060084.88E-11300348No hitNo description
SMARTSM004380.01310329IPR000967Zinc finger, NF-X1-type
PfamPF014220.17312327IPR000967Zinc finger, NF-X1-type
CDDcd060082.32E-9364407No hitNo description
SMARTSM004387.0E-4374393IPR000967Zinc finger, NF-X1-type
PfamPF014220.0011374391IPR000967Zinc finger, NF-X1-type
CDDcd060089.45E-13422470No hitNo description
SMARTSM004384.2E-4432451IPR000967Zinc finger, NF-X1-type
PfamPF014225.0E-5432449IPR000967Zinc finger, NF-X1-type
PfamPF014222.2488499IPR000967Zinc finger, NF-X1-type
CDDcd060081.38E-8517569No hitNo description
SMARTSM004380.0015527546IPR000967Zinc finger, NF-X1-type
PfamPF014224.1E-4527544IPR000967Zinc finger, NF-X1-type
SMARTSM004387.3584602IPR000967Zinc finger, NF-X1-type
SMARTSM004380.57637672IPR000967Zinc finger, NF-X1-type
PfamPF014220.019637652IPR000967Zinc finger, NF-X1-type
CDDcd060082.44E-4670721No hitNo description
PfamPF0142223674700IPR000967Zinc finger, NF-X1-type
SMARTSM004380.36681702IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MQPSTDRRRG GGPVATASRV WRARPAASSP GSAAGPAAAG PILPLPSSAP EARPPRRRSR  60
RSNHGNNQNH RPAAPQEQND NAGHRRRGPP PERPAPAPPA PAREHAPAPA AVETRGDGAV  120
PQLVQEIQDK LARGAVECMI CYDMVRRSAP IWSCGSCFSI FHLPCIRKWV RSPASAADAS  180
PAADPASLSW RCPGCQSVYA TLARDLAYTC FCGRQRDPPN DHFLTPHSCG EPCSKPLERA  240
EPLCAKGEDV DATRCPHVCV LQCHPGPCPP CKAFAPNRPC PCGKEIIGRR CADRSTPVTC  300
GRPCEQLLPC KRHRCEKVCH TGSCGDCAVP ISARCFCGKK NETLQCGDMM VKGKLSEEDG  360
VFSCNEVCGR TLACGNHACK DMCHPGPCGE CELMPGKVRT CHCGKTRLQE RRASCLDAIP  420
TCDKICDKKL PCGVHRCKVN CHEGECPPCL VLVEQKCRCG SSGQMVECYK VSMEEFRCNK  480
PCGRKKKCGR HRCSELCCPL SRNVAQLEGG NWDPHLCQIP CGKKLRCGQH LCQLLCHSGH  540
CPPCLETIFT DLTCACGRTS LPPPLPCGTP TPSCPHQCSV PQPCGHLASH SCHFGDCSPC  600
IVPVMRECIG GHVMLRNIPC GSKDIRCTQP CGKNRQCGIH ACNRPCHPPP CDQTPANGDA  660
SSSSGGKASC GQVCGAVRRE CKHTCTASCH PSSPCPDLRC EFSVPITCSC GRITATVPCG  720
AGGSSMGDNM FKVSIIQKLP MPLQSVESNG RVPLGQRKLS CDEECAKMEK KRVLAEAFDI  780
TPPNLDALHF GENSSSSDLV SDLFRREPKW VLAIEDRCKF LVLGKVRGSS SSNLKLHVFC  840
PMMKDKRDAI SLIAGRWKLS VQSACREPRC FVTIHVTSKS KPPARILGSK AGVPATAAHP  900
YFDPLVDMDP RLVVAMLDLP RDADVNALVL RFGGECELVW LNDKNAIAVF NDPARAATAL  960
RRLDYGSAYQ GAAMFMPSSA QASSGNVWIG EQKDGGFAAR NNPWKKPASA EPDLPSGDWS  1020
GVAGHAPAPG WRGVNTASQV MGTTNRWNVL ESDAAASSGS GNERKPAPGT DVHSTVSNTG  1080
NAGPSVTKLQ PDVEVDDWEE ACE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.137360.0endosperm| meristem| pedicel| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G307823
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G307823_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648524.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1D6NQZ50.0A0A1D6NQZ5_MAIZE; NF-X1-type zinc finger protein NFXL1
STRINGGRMZM2G307823_P010.0(Zea mays)
STRINGGRMZM2G409627_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1