PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G307588_P01
Common NameLOC542666, Zm.240
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 378aa    MW: 39599.1 Da    PI: 9.3244
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G307588_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.36.8e-4163138176
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                        +Cqv+gC +dls +k+y+ rhkvC++hsk p v+v+g+eqrfCqqCsrfh+l+efD++krsCrrrL +hnerrrk+
  GRMZM2G307588_P01  63 RCQVDGCGVDLSAVKQYYCRHKVCNMHSKEPRVFVAGIEQRFCQQCSRFHQLHEFDQGKRSCRRRLIGHNERRRKP 138
                        6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-3358125IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.57361138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-3962142IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3164137IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MATGGGSSRS DDVRGLKFGK KIYFEQDGGS GSGAGAVGGR KGKGVATGGA RPASAASAAQ  60
PPRCQVDGCG VDLSAVKQYY CRHKVCNMHS KEPRVFVAGI EQRFCQQCSR FHQLHEFDQG  120
KRSCRRRLIG HNERRRKPPP GPLTSRYGRL AASLQEPGRF RSFLLDFSYP RVPSSVRDAW  180
PGIQHGGDRM LGTVQWHGHQ EPPHPHRSAA AGYGNHAAYN CHGGLVAGGA PMLSSAAFEL  240
PPGGCVAGVA ADSSCALSLL STQPWDTTSH DHRSPAMPAA GAFDGTPVAP SVMASSYAAS  300
SAWTGSRDPA ADGARNAQRL DDALHLVHPG SAAVHFSGEL ELALQGSGGP PHLPRVDHGG  360
SGGGTFNHST TSAMNWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29641371184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.2400.0ear| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G307588
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G307588_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417770.0BT041777.2 Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295407.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0571e-138SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A3L6DZP80.0A0A3L6DZP8_MAIZE; Squamosa promoter-binding-like protein 17
TrEMBLB4FXD90.0B4FXD9_MAIZE; SBP transcription factor
STRINGGRMZM2G307588_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-41squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Cardon G, et al.
    Molecular characterisation of the Arabidopsis SBP-box genes.
    Gene, 1999. 237(1): p. 91-104
    [PMID:10524240]
  2. Cardon GH,Höhmann S,Nettesheim K,Saedler H,Huijser P
    Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: a novel gene involved in the floral transition.
    Plant J., 1997. 12(2): p. 367-77
    [PMID:9301089]