PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G307402_P01 | ||||||||
Common Name | Zm.26210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 26308.5 Da PI: 8.0753 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F++ L H+r+H GRMZM2G307402_P01 150 HECSSCGSVFTSGQALGGHMRRH 172 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.19 | 98 | 120 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.5E-9 | 98 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 98 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.4E-7 | 98 | 172 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.4E-11 | 149 | 173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 150 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.91 | 150 | 172 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSSVPDCSDA IVPNSKRRRH RSPPAASSSS SHSSSTTQKE ELEDEEEDMA KCLILLAQGP 60 AAIEAARVMP APRSRPKSTG SRRFLAAAEA RGGVCVSYEC KTCNRCFPSF QALGGHRTSH 120 NKHPRRPAEE VLAAMAITTT LSLAATRPAH ECSSCGSVFT SGQALGGHMR RHRPLTTTSS 180 SPATGTEDQQ DSSSKLLQES RINLELDLNL LPSTEQEVTS PPPKPPCHAP AAASPIDHIQ 240 GCCQFR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26210 | 0.0 | pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G307402 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G307402_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020395390.1 | 1e-178 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A1D6LLS7 | 1e-177 | A0A1D6LLS7_MAIZE; C2H2-type zinc finger family protein | ||||
TrEMBL | A0A3L6EFV1 | 1e-177 | A0A3L6EFV1_MAIZE; Zinc finger protein ZAT5 | ||||
STRING | GRMZM2G307402_P01 | 1e-178 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 3e-30 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G307402_P01 |