PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G307152_P01 | ||||||||
Common Name | EREB63 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 18669.8 Da PI: 9.9839 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 18 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sgykGVr+++ +g+Wv+eIr+p g r r +lg++ t+e Aa a++ a l+g GRMZM2G307152_P01 18 SGYKGVRRRR-WGKWVSEIRVP---GSRERLWLGSYATPEAAAVAHDTAVYFLRG 68 89*****777.**********8...435*********************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.03E-17 | 18 | 82 | No hit | No description |
SuperFamily | SSF54171 | 6.15E-17 | 18 | 81 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-9 | 18 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.022 | 19 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-23 | 19 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 20 | 31 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-24 | 20 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MRRAEPVGEQ ADAERRMSGY KGVRRRRWGK WVSEIRVPGS RERLWLGSYA TPEAAAVAHD 60 TAVYFLRGGG GAGDVAALNF PERAAAAYGA GGRLSPRSVQ RVASDAGMAA DAQLVAARED 120 TRALRAGIGG GASARPRDRD AGDACAGRAH NASLHSTGAG REQPVSGEIS VDDMDILL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G307152 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G307152_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727676 | 0.0 | KJ727676.1 Zea mays clone pUT5603 AP2-EREBP transcription factor (EREB63) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354077.1 | 1e-121 | uncharacterized protein LOC100280906 | ||||
Swissprot | Q9C9I8 | 1e-31 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A060D112 | 1e-120 | A0A060D112_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G307152_P01 | 1e-121 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 5e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G307152_P01 |
Publications ? help Back to Top | |||
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