PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G306610_P01
Common NameMADS46, ZEAMMB73_437077
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 451aa    MW: 47877 Da    PI: 4.2983
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G306610_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.44.5e-141152344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i n + r  tf kR++g+ KKA+EL vLC++eva++ +  +g
  GRMZM2G306610_P01 11 IPNRRLRISTFGKRKEGLKKKANELAVLCGVEVALVAAPADG 52
                       679999*****************************9876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-12162IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-17175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.11152IPR002100Transcription factor, MADS-box
CDDcd002661.80E-19281No hitNo description
PRINTSPR004041.0E-5323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-141148IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGRRKVSMGI IPNRRLRIST FGKRKEGLKK KANELAVLCG VEVALVAAPA DGDGGAADVW  60
ESKEGVLARY RELDPEVRAR HTFREYLYAE LSKEEAKLAR VTQAGPDGLD CWDKALDGVD  120
TVEEAQKLLE TIDAAIRDAD DRRRALGLPV DDDDDEDGGA GIVLEGIAPL SSAAVEDGYL  180
LDAFGGNGDA NDRAMATWGN NGFQEPCSAA NMQYGFQQFS SSSNGATVGY DYDLQMVLDM  240
YNNGGPATGA YYYQTRDAGT MQDGYGFPCA STSARYFGMP SAYQMQPVVG SGAAEPILGM  300
SSAGEPCHAM VPVPVEYPSA HTSLNYVDTQ ATHGVHGSGG TSFAMETRGS FINAPPAFSV  360
ATSTGGGGGN FVSAPPAAPS QTMGGTVDDY TRAQPLPMSR GTVDDFTRAQ PLRMSYGDDM  420
TIAGTYAMQS GIEEVHYLSD LADSQLNLWG N
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G306610
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G306610_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275230.0KJ727523.1 Zea mays clone pUT5382 MADS transcription factor (MADS46) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001358005.10.0uncharacterized protein LOC115072893
TrEMBLA0A3L6DV550.0A0A3L6DV55_MAIZE; Uncharacterized protein
TrEMBLK7V0B50.0K7V0B5_MAIZE; MADS transcription factor
STRINGGRMZM2G306610_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Representative plantOGRP1164635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-09AGAMOUS-like 36