PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G306357_P01
Common NameLOC103651515, Zm.24880
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 691aa    MW: 74173.8 Da    PI: 5.0105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G306357_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.7e-09489510526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+++  +GtC +Gd+CkF+H+
  GRMZM2G306357_P01 489 ECHNYKNNGTCARGDNCKFSHV 510
                        6********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.263430457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5430455IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017431456IPR000571Zinc finger, CCCH-type
SMARTSM003560.012459485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.16459483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967484512IPR000571Zinc finger, CCCH-type
SMARTSM003560.008487511IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5488513IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6489510IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4490509IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MEDALAPPSV APTPSPLAAA AVLTRRRSHL DSASFRTLSR LFSHCLHINP SPCGISPPVP  60
EPVAADFVGG DPDDSPERPN GADFDRLKDV QIEAADAGGP SLHGTVHQPA AANSTLDLVE  120
AEAEALQLEG ADAVGVVEST SCMTRAEAGE SAVLVVESTS CKTTAEVEES AVGAGLAMVG  180
DVSLKSVESL LETKVDESVE VAVGDDEGCL LFEAMLTNFT GLIDDVDAGA IPTQRCAVSG  240
GDLQNSKASE DLKQLGDRIE EGEPLRNCDN GQNDGGGFEE GEIEGEFQDL GSEESGNSEH  300
GDEDGEDEKL EDNSISRGSG PNKSCDYGTQ FGNLQSIPET GNDHLILNRD AIVRGDAQIS  360
VTRAQAVTYD EVVDWNETPL PDNETVNPGK KRKRILTEER KAKKTKNKRK NRALQRIADG  420
VKRPKLTPVT KPKKPCHFYD HGKCRQGNNC KFSHDFTPST KSKPCTHFAC GSCLKGEECP  480
YDHELSKYEC HNYKNNGTCA RGDNCKFSHV MPTTEGTPTQ DAKTSDASLA YEKTNTREHT  540
RSQKNATVHN VAPSNSILRN LAGVSSKSQN VSNHIPKGVQ FLSIGKGQSN LDSLHLDALF  600
MEKQRNANGT QHNLGGHEAE RQKIVKQNSQ KPNLLLDDKN SSEGATRHPC SDPQKATLPV  660
NSIATPGSIH TQHEVSEASR ILQEFLFGAG S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.248800.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G306357
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G306357_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4699930.0JX469993.1 Zea mays subsp. mays clone UT3353 C3H-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675379.10.0zinc finger CCCH domain-containing protein 7
TrEMBLA0A096T5350.0A0A096T535_MAIZE; C3H-type transcription factor
STRINGGRMZM2G306357_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Representative plantOGRP81611212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-06C3H family protein