PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G305856_P02
Common NameLOC103629226, MYB21, Zm.13868
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 252aa    MW: 28017.5 Da    PI: 7.5023
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G305856_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-163376146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++
  GRMZM2G305856_P02 33 RGRITADEERLILQLHAQWGSR-WSRIARSLP-GRTDNEIKNFWRT 76
                       899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-201383IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-91340IPR009057Homeodomain-like
PROSITE profilePS500904.311427IPR017877Myb-like domain
PROSITE profilePS5129422.8152882IPR017930Myb domain
SMARTSM007171.3E-133280IPR001005SANT/Myb domain
PfamPF002499.1E-143376IPR001005SANT/Myb domain
CDDcd001678.53E-113776No hitNo description
Gene3DG3DSA:1.10.10.601.1E-174177IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MRMCRRRTRA GLRRTGKSCR LRWVNYLHPG LRRGRITADE ERLILQLHAQ WGSRWSRIAR  60
SLPGRTDNEI KNFWRTRARK QKAAAQQQQQ QQDSRSSKTA TASAFSGSAS SVTTTTSSCS  120
GSPSPTSRGC GTATSSSALT ESALRQSGGE DEDAELDEAS TTTTTTASQR QHQDDDHQQQ  180
HQECYASDHF WNDIAAAEAA IYMLIDGGWT GSGPGHPAAD PPSSPAWEYC SDYSLWRIDD  240
DEYYEKMLDS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-15148137104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-15148191158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-15148191158MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-15148160127MYB TRANSFORMING PROTEIN
1mse_C1e-15148137104C-Myb DNA-Binding Domain
1msf_C1e-15148137104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.828580.0aerial organ| endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G305856
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G305856_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281940.0KJ728194.1 Zea mays clone pUT6468 MYB transcription factor (MYB21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001309882.10.0uncharacterized protein LOC103629226
TrEMBLK7UBC40.0K7UBC4_MAIZE; MYB transcription factor (Fragment)
STRINGGRMZM2G305856_P011e-176(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.22e-33myb domain protein 59