PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G305856_P01
Common NameLOC103629226, Zm.13868
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 327aa    MW: 36066.2 Da    PI: 7.0039
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G305856_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-1555102148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  GRMZM2G305856_P01  55 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 102
                        79********************************************97 PP
2Myb_DNA-binding49.97.5e-16108151146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++
  GRMZM2G305856_P01 108 RGRITADEERLILQLHAQWGSR-WSRIARSLP-GRTDNEIKNFWRT 151
                        899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.83550102IPR017930Myb domain
SuperFamilySSF466899.8E-2853149IPR009057Homeodomain-like
SMARTSM007173.1E-1354104IPR001005SANT/Myb domain
PfamPF002491.7E-1355102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2056109IPR009057Homeodomain-like
CDDcd001675.27E-1057102No hitNo description
PROSITE profilePS5129422.815103157IPR017930Myb domain
SMARTSM007171.3E-13107155IPR001005SANT/Myb domain
PfamPF002491.3E-13108151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-21110155IPR009057Homeodomain-like
CDDcd001673.09E-10112151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDDRYPHHQS SMATPAAASK MSKKLQGGGD RSSGSSSRGS GNSDKQQVPA AAMRKGPWTE  60
EEDAQLVWFV RLFGERRWDF LAKVSGLRRT GKSCRLRWVN YLHPGLRRGR ITADEERLIL  120
QLHAQWGSRW SRIARSLPGR TDNEIKNFWR TRARKQKAAA QQQQQQQDSR SSKTATASAF  180
SGSASSVTTT TSSCSGSPSP TSRGCGTATS SSALTESALR QSGGEDEDAE LDEASTTTTT  240
TASQRQHQDD DHQQQHQECY ASDHFWNDIA AAEAAIYMLI DGGWTGSGPG HPAADPPSSP  300
AWEYCSDYSL WRIDDDEYYE KMLDSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-254615649158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-254615649158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.828580.0aerial organ| endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G305856
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G305856_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281940.0KJ728194.1 Zea mays clone pUT6468 MYB transcription factor (MYB21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001309882.11e-177uncharacterized protein LOC103629226
TrEMBLA0A1D6LHJ50.0A0A1D6LHJ5_MAIZE; Putative MYB DNA-binding domain superfamily protein
TrEMBLA0A3L6EAZ80.0A0A3L6EAZ8_MAIZE; Myb-related protein MYBAS2
STRINGGRMZM2G305856_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.37e-55myb domain protein 59