PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G304840_P01
Common NameZEAMMB73_673964
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 304aa    MW: 33793.3 Da    PI: 5.0873
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G304840_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-1172113245
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          WT  E + l++av  +G + Wk++++++   R++k+c+ r+ 
  GRMZM2G304840_P01  72 PDWTDKETLHLLEAVLHYGED-WKKVSEHVS-SRSEKDCIARFI 113
                        67*****************99.*********.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129318.37369120IPR017884SANT domain
SMARTSM007172.0E-870118IPR001005SANT/Myb domain
SuperFamilySSF466896.5E-1271123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-871113IPR009057Homeodomain-like
PfamPF002491.0E-1072114IPR001005SANT/Myb domain
CDDcd001671.33E-774115No hitNo description
Gene3DG3DSA:3.30.390.302.5E-11172240IPR004099Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
PfamPF028522.7E-8172239IPR004099Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
SuperFamilySSF554241.15E-8182242IPR016156FAD/NAD-linked reductase, dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045454Biological Processcell redox homeostasis
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKRLTATNLA AFDGPAESTT KSHNATHVPA PKRMADQADI SLCGRCYVNN NYRPGLSPAN  60
FKRVEITEDA KPDWTDKETL HLLEAVLHYG EDWKKVSEHV SSRSEKDCIA RFIRLPFGEQ  120
FMGHKEDRMR FENTDDNTDE PGANVSKRLC LTPLADASNP IMAQSHPLDC AVATSGIDNT  180
IKATEEYGDV DVFVANLRPL KATLSGLPDR VLMKILVCAT SNKVVGVHMC GDDAPEIIQL  240
WTPDANATSM VAGPELDVLS AIENNQRLYC LLIFWNEFGC ESFQKVSSVT RADLLSLELL  300
RYLY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.853250.0cell culture| ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G304840
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G304840_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0410660.0BT041066.1 Zea mays full-length cDNA clone ZM_BFc0171G18 mRNA, complete cds.
GenBankEU9654000.0EU965400.1 Zea mays clone 285791 ATSWI3B mRNA, complete cds.
GenBankKJ7278650.0KJ727865.1 Zea mays clone pUT5957 MYB-related transcription factor (MYBR88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G304840_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP941744