PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G304573_P01 | ||||||||
Common Name | LOC103636034, ZEAMMB73_514125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 298aa MW: 30992.1 Da PI: 9.4966 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.3 | 1.5e-28 | 133 | 192 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg++ pr+YYrCt + +Cpv+kkv+r+a+d+ v+++tY g H h+ GRMZM2G304573_P01 133 VNDGCQWRKYGQKVAKGNPWPRAYYRCTATpDCPVRKKVQRCAHDTAVLVTTYDGVHSHP 192 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-29 | 119 | 192 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 125 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.326 | 128 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-33 | 133 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-24 | 134 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MELKTTLVFK DEMMRGAGAA HKMNLGDDEP AAGPVLSLSL GPAANANRAS FRAEGRRGEI 60 SASNDADDGT GLALGLRCGG GSGAKRQRVV IVDNDDGGSS EKALRRLPGA PPPPPQQRPD 120 RVTVRTRCSA ATVNDGCQWR KYGQKVAKGN PWPRAYYRCT ATPDCPVRKK VQRCAHDTAV 180 LVTTYDGVHS HPLTPYAAAA AAARRASCDG APPRLAFPLA ALPQRYCSPS GAVAISGLPA 240 AASSHGHGNV VPMASIMQKA VADPNFRAAV MAAVASYVSE QCGGRNIDDG AFTLPPPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-24 | 121 | 195 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G304573 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G304573_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656617.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | K7V6U3 | 0.0 | K7V6U3_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G304573_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14319 | 22 | 26 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 5e-37 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G304573_P01 |
Entrez Gene | 103636034 |