PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G303463_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 669aa    MW: 73080.2 Da    PI: 9.1912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G303463_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-10448490451
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYI 51 
                        +h e+E +RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI
  GRMZM2G303463_P01 448 NHVEAEHQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYI 490
                        799***********************66......**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-28119240IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-13443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.951444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-11447490No hitNo description
Gene3DG3DSA:4.10.280.109.6E-12447490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7448490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MPLHLAAMQG RPAYMQAPVS CPECDCDCSL CCWVRLIRPE ADGPLPRDFS SVPFRLVGIM  60
VMKMEHEDNG AIGGTDGTWT EDDRALGAAV LGADAFAYLT KGGGAISEGL VATSLPGDLQ  120
NKLQELVESE SPGTSWNYAI FWQLSRTKSG DLVLGWGDGW CGEPRDGELG AAASAGSDDS  180
KQRMRKRVLQ RLHIAFGVAD EEDYSPGIDQ VTDTEMFFLA SMYFAFPRHA GGPGQAFAAG  240
IPSGFPIRHE AERSPGLAKI FGKDLNLGRP SVGLAVGLSN SKVDERTWEQ RSAVGGTSLL  300
PSVQKGLQNF SWSQARGLNS HQQKFGNGVL IVSNNEGAHR NNGAVDSPSA AQFQLRKAPQ  360
LQKLSVVQKT PQLVNQQPMQ AHVPRQIDFS AGSSSKPGVL VTRAGVLDGE SAEVDGLCKE  420
EGPPPVMEDR WPRKRGRKPA NGREEPLNHV EAEHQRREKL NQRFYALRAV VPNISKMDKA  480
SLLGDAITYI PDERVALPPL PSRRPCRSGG AHLHGLVVEL LLSPSAPPEA KSRRFCSTLG  540
MTNQAVNAAK EAVQRSEDLD IRIIRLYEVK PKRVQFQKAD SVILKNHADI QMQKVKTWKS  600
SANLKKKSLR ITEIRLLKEA YGNHWLLRNP IRVEVKTEAK STSKVAGQQE LGPSITPLGL  660
RLELFPTKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-24442492252Transcription factor MYC2
5gnj_B1e-24442492252Transcription factor MYC2
5gnj_E1e-24442492252Transcription factor MYC2
5gnj_F1e-24442492252Transcription factor MYC2
5gnj_G1e-24442492252Transcription factor MYC2
5gnj_I1e-24442492252Transcription factor MYC2
5gnj_M1e-24442492252Transcription factor MYC2
5gnj_N1e-24442492252Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.254630.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G303463
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G303463_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539680.0BT053968.1 Zea mays full-length cDNA clone ZM_BFc0083E19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145780.21e-154uncharacterized protein LOC100279287
RefseqXP_020397645.11e-154uncharacterized protein LOC100279287 isoform X1
RefseqXP_020397646.11e-154uncharacterized protein LOC100279287 isoform X1
TrEMBLA0A1D6F7530.0A0A1D6F753_MAIZE; Transcription factor bHLH3
STRINGGRMZM2G303463_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-66ABA-inducible BHLH-type transcription factor