PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G302891_P03 | ||||||||
Common Name | LOC100279576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 394aa MW: 43640.5 Da PI: 6.6187 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.5e-05 | 359 | 381 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F + + L H+r+H GRMZM2G302891_P03 359 HQCKVCGKVFGSGHALGGHMRLH 381 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.37E-5 | 7 | 33 | No hit | No description |
PROSITE profile | PS50157 | 9.598 | 9 | 38 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.9 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 11 | 33 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.1E-8 | 11 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.28E-10 | 276 | 300 | No hit | No description |
PROSITE profile | PS50157 | 9.827 | 278 | 305 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.81 | 278 | 300 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 280 | 300 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.28E-10 | 354 | 381 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 357 | 381 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.261 | 359 | 386 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-8 | 359 | 382 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0049 | 359 | 381 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 361 | 381 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MPSRRPQKYW CKICNKNFPS GRVLGGHMSC HRHAGKQLKS TPDLVVNLPV PLLGSSDEKS 60 SLSSLESQSL HCSKVLSSCQ SPRGDLGINS EKKVVTKSEE PEPAGLMESW ANGNGDHGHS 120 VMLFSPVKRK RSKRMMPVLK SEMDAAVALL MLAEHSDKTS AYEDCCGGDK DRNISTPMVS 180 KEINLNAFDQ LVQSDESTNS ARLQSDKNPA YEGFDEYCEK EKENSLNLAA DDPKKEVLLD 240 VFDYEMDVDA EFMKPGDGIS VEELKSSELS AETNIKRYQC KVCRKLLSSR YALGCHIRLH 300 CEKESSLNLV TDAPKKEVLL DVFDHGMDVD AEFIKPGTDI SVEELKSSDL SAAMNIKKHQ 360 CKVCGKVFGS GHALGGHMRL HYVRKSNPQQ EVAD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.87955 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G302891 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G302891_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054487 | 0.0 | BT054487.1 Zea mays full-length cDNA clone ZM_BFc0088C22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146045.1 | 0.0 | uncharacterized protein LOC100279576 | ||||
Refseq | XP_008672710.1 | 0.0 | uncharacterized protein LOC100279576 isoform X1 | ||||
TrEMBL | B7ZYU5 | 0.0 | B7ZYU5_MAIZE; Zinc finger C2H2 type family protein expressed | ||||
STRING | GRMZM2G302891_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 5e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G302891_P03 |