PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G302891_P02
Common NameLOC100279576
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 471aa    MW: 52119.4 Da    PI: 7.0115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G302891_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05436458123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cgk+F + + L  H+r+H
  GRMZM2G302891_P02 436 HQCKVCGKVFGSGHALGGHMRLH 458
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.27E-9831No hitNo description
PROSITE profilePS501579.598938IPR007087Zinc finger, C2H2
SMARTSM003558.9931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801133IPR007087Zinc finger, C2H2
PfamPF139127.6E-81132IPR007087Zinc finger, C2H2
SuperFamilySSF576673.27E-9273300No hitNo description
PROSITE profilePS501579.827278305IPR007087Zinc finger, C2H2
SMARTSM003550.81278300IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-8357381No hitNo description
SMARTSM003555.6359381IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-4359381IPR007087Zinc finger, C2H2
PROSITE patternPS000280361381IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-8431458No hitNo description
Gene3DG3DSA:3.30.160.601.4E-4434458IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.1E-9435459IPR007087Zinc finger, C2H2
SMARTSM003550.0049436458IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261436463IPR007087Zinc finger, C2H2
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MPSRRPQKYW CKICNKNFPS GRVLGGHMSC HRHAGKQLKS TPDLVVNLPV PLLGSSDEKS  60
SLSSLESQSL HCSKVLSSCQ SPRGDLGINS EKKVVTKSEE PEPAGLMESW ANGNGDHGHS  120
VMLFSPVKRK RSKRMMPVLK SEMDAAVALL MLAEHSDKTS AYEDCCGGDK DRNISTPMVS  180
KEINLNAFDQ LVQSDESTNS ARLQSDKNPA YEGFDEYCEK EKENSLNLAA DDPKKEVLLD  240
VFDYEMDVDA EFMKPGDGIS VEELKSSELS AETNIKRYQC KVCRKLLSSR YALGCHIRLH  300
CEKESSLNLV TDAPKKEVLL DVFDHGMDVD AEFIKPGTDI SVEELKSSDL SAAMNIKKHQ  360
CKVCRKLLRS GHALGGHMSL HFKKKNKLNS GVDVPKEVLL DAFVHEVDAD IEFMKPATDL  420
ELKSSDISAA VNVKTHQCKV CGKVFGSGHA LGGHMRLHYV RKSNPQQEVA D
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.879550.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G302891
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G302891_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544870.0BT054487.1 Zea mays full-length cDNA clone ZM_BFc0088C22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146045.10.0uncharacterized protein LOC100279576
RefseqXP_008672710.10.0uncharacterized protein LOC100279576 isoform X1
TrEMBLB7ZYU50.0B7ZYU5_MAIZE; Zinc finger C2H2 type family protein expressed
STRINGGRMZM2G302891_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Representative plantOGRP1465022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-11C2H2 family protein