PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G302891_P01
Common NameLOC100279576
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 394aa    MW: 43640.5 Da    PI: 6.6187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G302891_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05359381123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cgk+F + + L  H+r+H
  GRMZM2G302891_P01 359 HQCKVCGKVFGSGHALGGHMRLH 381
                        79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.37E-5733No hitNo description
PROSITE profilePS501579.598938IPR007087Zinc finger, C2H2
SMARTSM003558.9931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801133IPR007087Zinc finger, C2H2
PfamPF139126.1E-81132IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-10276300No hitNo description
PROSITE profilePS501579.827278305IPR007087Zinc finger, C2H2
SMARTSM003550.81278300IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-10354381No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4357381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.261359386IPR007087Zinc finger, C2H2
PfamPF139121.8E-8359382IPR007087Zinc finger, C2H2
SMARTSM003550.0049359381IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280361381IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MPSRRPQKYW CKICNKNFPS GRVLGGHMSC HRHAGKQLKS TPDLVVNLPV PLLGSSDEKS  60
SLSSLESQSL HCSKVLSSCQ SPRGDLGINS EKKVVTKSEE PEPAGLMESW ANGNGDHGHS  120
VMLFSPVKRK RSKRMMPVLK SEMDAAVALL MLAEHSDKTS AYEDCCGGDK DRNISTPMVS  180
KEINLNAFDQ LVQSDESTNS ARLQSDKNPA YEGFDEYCEK EKENSLNLAA DDPKKEVLLD  240
VFDYEMDVDA EFMKPGDGIS VEELKSSELS AETNIKRYQC KVCRKLLSSR YALGCHIRLH  300
CEKESSLNLV TDAPKKEVLL DVFDHGMDVD AEFIKPGTDI SVEELKSSDL SAAMNIKKHQ  360
CKVCGKVFGS GHALGGHMRL HYVRKSNPQQ EVAD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.879550.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G302891
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G302891_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544870.0BT054487.1 Zea mays full-length cDNA clone ZM_BFc0088C22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146045.10.0uncharacterized protein LOC100279576
RefseqXP_008672710.10.0uncharacterized protein LOC100279576 isoform X1
TrEMBLB7ZYU50.0B7ZYU5_MAIZE; Zinc finger C2H2 type family protein expressed
STRINGGRMZM2G302891_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-10C2H2 family protein