PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G302549_P01 | ||||||||
Common Name | LOC103625811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 507aa MW: 55663.5 Da PI: 6.0034 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 7e-13 | 179 | 217 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l GRMZM2G302549_P01 179 DRKLVKLVEQFGLRKWSYIAQLLP-GRVGKQCRERWHNHL 217 679*********************.*************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 4e-16 | 225 | 265 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W eEd l++a+k+ G++ W+ Ia++++ gRt++++k++w+ GRMZM2G302549_P01 225 IWNDEEDSVLIQAHKEVGNR-WAEIAKRLP-GRTENSIKNHWN 265 5*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.141 | 170 | 217 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-5 | 174 | 219 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-10 | 179 | 217 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 179 | 224 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-10 | 179 | 217 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.33E-27 | 196 | 273 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.228 | 218 | 272 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-16 | 222 | 270 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 225 | 270 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.44E-13 | 226 | 268 | No hit | No description |
Pfam | PF00249 | 4.1E-14 | 226 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MDFSCFQPHM GVCSYLPFDP YMQQDGRYEL HPVEHHHPFE AIGDYTPATF DDLGRQLFFA 60 ESKKPVSGHA SPIGRSRVGS SQLPLLTPKA EVSHLMDISG LAGSYKAYET NGRFLPRKKT 120 SSNKANVVKG QWTAEEDRYW LKSMHGYSLL FLYFFFSVSH DLLSVVVSCN NEFILGNFDR 180 KLVKLVEQFG LRKWSYIAQL LPGRVGKQCR ERWHNHLRPN IKKDIWNDEE DSVLIQAHKE 240 VGNRWAEIAK RLPGRTENSI KNHWNATKRR QFARRRSRAS ASTSKGPPKP GSLLQNYIKG 300 LGIGPVISNR SAAPLPEPTT PPPPPSSPET PGGARSANQA GETTLECTTV LPPTSVHGYD 360 EYSNCSGESH QSCEVLLAPI ISCGDDAFSV GMCGAGGGGG LFDTDDADAF LQAYGVAADD 420 IVDGIGMSYY VFNDGHVDHA ATVDAEIDME TMMMMWDDDD DCAAALGLGC AAGPAGVESA 480 VRVKEEMDLQ VETMVAATHK CGDAQDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-42 | 179 | 271 | 12 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-42 | 179 | 271 | 12 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.114467 | 5e-37 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G302549 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G302549_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243252 | 3e-44 | AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020393188.2 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB115 | ||||
TrEMBL | A0A1D6GFI1 | 0.0 | A0A1D6GFI1_MAIZE; Transcription factor MYB98 | ||||
STRING | GRMZM2G302549_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 8e-51 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G302549_P01 |
Entrez Gene | 103625811 |