PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G302549_P01
Common NameLOC103625811
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 507aa    MW: 55663.5 Da    PI: 6.0034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G302549_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.47e-13179217948
                        HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        d +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  GRMZM2G302549_P01 179 DRKLVKLVEQFGLRKWSYIAQLLP-GRVGKQCRERWHNHL 217
                        679*********************.*************97 PP

2Myb_DNA-binding50.84e-16225265345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         W  eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  GRMZM2G302549_P01 225 IWNDEEDSVLIQAHKEVGNR-WAEIAKRLP-GRTENSIKNHWN 265
                        5*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.141170217IPR017930Myb domain
SMARTSM007175.0E-5174219IPR001005SANT/Myb domain
CDDcd001672.40E-10179217No hitNo description
Gene3DG3DSA:1.10.10.601.3E-23179224IPR009057Homeodomain-like
PfamPF002493.3E-10179217IPR001005SANT/Myb domain
SuperFamilySSF466893.33E-27196273IPR009057Homeodomain-like
PROSITE profilePS5129424.228218272IPR017930Myb domain
SMARTSM007173.5E-16222270IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-20225270IPR009057Homeodomain-like
CDDcd001672.44E-13226268No hitNo description
PfamPF002494.1E-14226265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDFSCFQPHM GVCSYLPFDP YMQQDGRYEL HPVEHHHPFE AIGDYTPATF DDLGRQLFFA  60
ESKKPVSGHA SPIGRSRVGS SQLPLLTPKA EVSHLMDISG LAGSYKAYET NGRFLPRKKT  120
SSNKANVVKG QWTAEEDRYW LKSMHGYSLL FLYFFFSVSH DLLSVVVSCN NEFILGNFDR  180
KLVKLVEQFG LRKWSYIAQL LPGRVGKQCR ERWHNHLRPN IKKDIWNDEE DSVLIQAHKE  240
VGNRWAEIAK RLPGRTENSI KNHWNATKRR QFARRRSRAS ASTSKGPPKP GSLLQNYIKG  300
LGIGPVISNR SAAPLPEPTT PPPPPSSPET PGGARSANQA GETTLECTTV LPPTSVHGYD  360
EYSNCSGESH QSCEVLLAPI ISCGDDAFSV GMCGAGGGGG LFDTDDADAF LQAYGVAADD  420
IVDGIGMSYY VFNDGHVDHA ATVDAEIDME TMMMMWDDDD DCAAALGLGC AAGPAGVESA  480
VRVKEEMDLQ VETMVAATHK CGDAQDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-4217927112104C-Myb DNA-Binding Domain
1msf_C2e-4217927112104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1144675e-37meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G302549
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G302549_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432523e-44AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393188.20.0LOW QUALITY PROTEIN: transcription factor MYB115
TrEMBLA0A1D6GFI10.0A0A1D6GFI1_MAIZE; Transcription factor MYB98
STRINGGRMZM2G302549_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.18e-51myb domain protein 98