PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G302323_P01
Common NameLOC103653052, ZEAMMB73_968714, Zm.43511
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 850aa    MW: 96714.6 Da    PI: 7.2058
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G302323_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.53.6e-2687176289
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        fY +YA +vGFsvr+++s+ksk +++i++ +fvCs+eg+++e++     +k+r++ a+ r gC+a+l+v ++ d+kw vtkl++eHnHe+
  GRMZM2G302323_P01  87 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSREGFSKEKRVVtaGKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHEV 176
                        9***************************************998876556778888899******************************95 PP
2FAR160.74.5e-19210300291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++  ++k+ r    +r gC+a +++ ++ +++w v+kl leH+Hel p
  GRMZM2G302323_P01 210 FYYSYASRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRESNgeDTKRVRAMDPSRDGCDALFEIIRKGKDTWTVSKLILEHTHELKP 300
                        9*******************9.6777*************99998886667777888999******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.1E-2487176IPR004330FAR1 DNA binding domain
PfamPF031011.9E-16210300IPR004330FAR1 DNA binding domain
PfamPF105515.4E-22401492IPR018289MULE transposase domain
PfamPF044342.7E-5676712IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.557680716IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-4691718IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHSVHIVDHQ AQSALAAAAA AIQPQSVCRD  60
LFPVESDACL EPRLGMEFES GEAAKTFYIA YAGRVGFSVR IARSRKSKCS ESIIMLRFVC  120
SREGFSKEKR VVTAGKKTRK RPASIREGCN AMLEVLRRGD SKWIVTKLVK EHNHEVGLPS  180
RVQYIAIESD TVVDPYIGME FESLESAKTF YYSYASRVGF EARVRQSRKS QDESLKMLKL  240
VCSRHRYHSG RESNGEDTKR VRAMDPSRDG CDALFEIIRK GKDTWTVSKL ILEHTHELKP  300
APASRVHCVR SQGEVLVIAN NFSDTRNLLL NGQDSQHPRE VRYNDLGPED AQSLFEYLKK  360
RQEEDPSFFY AVQYEKNGHS TNIFWADAKA RMAYYHFGDA VRFETTYRKN KETIPIVIFS  420
GVNHHVQPVV FGCALLLDES EASFTWLFEK WLEAMHMGPP VSLLTELNRG MAAAVAKVLP  480
NTHHIFCERH ILDTMKEDLH GTFPDPVALV TDLRKCIDGS RIEELFDSGW NSVIIKHELS  540
NNELLQSLYD IRQRWAPAYT KNVFYPRNLM PTTFGSIEKA IQKYFSSKTE LRVAVCQLGQ  600
VISSSFEAEV QADYFTMFQM PALSTASPVE KQGSSIFTST IFGLFQGQFV DSFGYHAERL  660
EDDTVHKYRV NRYEGDEEIH TVYFNPDQGT VNCSCCLFES CGILCRHALR IFIIEGVHDL  720
PKAYILKRWT KHAKNIDTSD NYIDLRGDRD DPSTARFNDL FCHVVKFAKE GSKSAEIYAV  780
AKDSLSKAFD EVVQSSKNFR GQQNLQSYTM SLKRSIKKFG KGRDSSDKSS KRSASKHPLM  840
ECDDVDDQIY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.435110.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G302323
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G302323_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678251.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_008678252.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R8740.0A0A1Z5R874_SORBI; Uncharacterized protein
STRINGGRMZM2G302323_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-119FAR1-related sequence 5