PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G301860_P01 | ||||||||
Common Name | EREB122, LOC100281128, ZEAMMB73_970860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 19587 Da PI: 10.5644 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8.1e-19 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p +kr r++lg++ tae Aa+a++ a +l+g GRMZM2G301860_P01 49 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAEAAARAYDTAVFCLRG 98 7******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.28E-27 | 48 | 108 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 48 | 107 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-12 | 49 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.907 | 49 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 49 | 108 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-38 | 49 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MERDATAFCP PPQPAPAPAS HAAVLGAGVA VAVAPAAGNG RGGGGGGKQY RGVRMRKWGK 60 WVAEIREPNK RSRIWLGSYS TAEAAARAYD TAVFCLRGRA ARLNFPDQLD GAQAAAAADS 120 TEGARRNGAG LTAAAIRKKA AEVGARVDAL HCGAGAGLAG GGASPLLLSH RRRPKNPDLN 180 REPTPDTSDD E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 40 | 110 | 5 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G301860 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G301860_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955682 | 0.0 | EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659247.1 | 1e-133 | ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | O22174 | 9e-41 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | K7W642 | 1e-132 | K7W642_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G301860_P01 | 1e-132 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 5e-32 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G301860_P01 |
Entrez Gene | 103638017 |
Publications ? help Back to Top | |||
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