PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G300924_P01
Common NameLOC103653830, ZEAMMB73_874454, Zm.40101
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 445aa    MW: 47986.8 Da    PI: 9.6846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G300924_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18212261255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  GRMZM2G300924_P01 212 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRG 261
                        59******9.**********955...5*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-31211271No hitNo description
PROSITE profilePS5103222.906212269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-32212270IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23212270IPR016177DNA-binding domain
SMARTSM003801.8E-38212275IPR001471AP2/ERF domain
PRINTSPR003677.8E-11213224IPR001471AP2/ERF domain
PfamPF008475.3E-12213261IPR001471AP2/ERF domain
PRINTSPR003677.8E-11235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEPVGGDGGG GRGRGRGRSW KGKGVSSGSA AGRQLAPVLE DAPAAALLRP LKKIRSPDRR  60
LNRSLSSLSP APPSPDSSSA FNPTPLPSAR QIFLAPEAST AGSPRLLPLL QYSSEFQRPM  120
TPPPPDQQQL QQMISFGSSQ QPRQEFVAAA AATPLFPPQL VAPEVQQQML LRYWSEALNL  180
SPRGFRGGAV PLPPARLYQQ LLLRASSGPP KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG  240
TFDTAEDAAM AYDREAFKLR GDNARLNFPD LFLGKGRVGG SGRTSAAASC SSSAPPTPDD  300
SHMKQAAQQQ QRVRDGEQPC SGEAKPLLPE TETERADNSE PKPNPELQSA DHQGDGTTAM  360
FQPSGGVWGP ADEAWFSAWG PGSSVWDYDM DNAHGLFLQS RFASEATSMD YVPSTPEVPA  420
VGTAVASLSP PPPPPRSPTY MKEKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19211269463ATERF1
3gcc_A1e-19211269463ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G300924
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G300924_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283810.0KJ728381.1 Zea mays clone pUT6664 AP2-EREBP transcription factor (EREB170) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020408231.10.0ethylene-responsive transcription factor ERF053
TrEMBLK7UHB40.0K7UHB4_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G300924_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-36ERF family protein