PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G300924_P01 | ||||||||
Common Name | LOC103653830, ZEAMMB73_874454, Zm.40101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 445aa MW: 47986.8 Da PI: 9.6846 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 212 | 261 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+g GRMZM2G300924_P01 212 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRG 261 59******9.**********955...5*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.15E-31 | 211 | 271 | No hit | No description |
PROSITE profile | PS51032 | 22.906 | 212 | 269 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-32 | 212 | 270 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 212 | 270 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-38 | 212 | 275 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-11 | 213 | 224 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-12 | 213 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-11 | 235 | 251 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MEPVGGDGGG GRGRGRGRSW KGKGVSSGSA AGRQLAPVLE DAPAAALLRP LKKIRSPDRR 60 LNRSLSSLSP APPSPDSSSA FNPTPLPSAR QIFLAPEAST AGSPRLLPLL QYSSEFQRPM 120 TPPPPDQQQL QQMISFGSSQ QPRQEFVAAA AATPLFPPQL VAPEVQQQML LRYWSEALNL 180 SPRGFRGGAV PLPPARLYQQ LLLRASSGPP KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG 240 TFDTAEDAAM AYDREAFKLR GDNARLNFPD LFLGKGRVGG SGRTSAAASC SSSAPPTPDD 300 SHMKQAAQQQ QRVRDGEQPC SGEAKPLLPE TETERADNSE PKPNPELQSA DHQGDGTTAM 360 FQPSGGVWGP ADEAWFSAWG PGSSVWDYDM DNAHGLFLQS RFASEATSMD YVPSTPEVPA 420 VGTAVASLSP PPPPPRSPTY MKEKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 211 | 269 | 4 | 63 | ATERF1 |
3gcc_A | 1e-19 | 211 | 269 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G300924 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G300924_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728381 | 0.0 | KJ728381.1 Zea mays clone pUT6664 AP2-EREBP transcription factor (EREB170) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020408231.1 | 0.0 | ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | K7UHB4 | 0.0 | K7UHB4_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G300924_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G300924_P01 |
Entrez Gene | 103653830 |