PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G180947_P01 | ||||||||
Common Name | LOC103647828, Zm.53881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YB | ||||||||
Protein Properties | Length: 205aa MW: 21814.4 Da PI: 6.2373 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 182.8 | 2.9e-57 | 21 | 116 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 reqdrflPianvsrimkk+lPanakiskd ketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+k+rel GRMZM2G180947_P01 21 REQDRFLPIANVSRIMKKALPANAKISKDGKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKLYLHKFREL 112 89****************************************************************************************** PP NF-YB 94 egek 97 eg+k GRMZM2G180947_P01 113 EGDK 116 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.2E-53 | 18 | 124 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.86E-39 | 23 | 126 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-26 | 26 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 8.1E-21 | 54 | 72 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 57 | 73 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 8.1E-21 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 8.1E-21 | 92 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MPDSDNDESG GPSNADFSSP REQDRFLPIA NVSRIMKKAL PANAKISKDG KETVQECVSE 60 FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEDYVE PLKLYLHKFR ELEGDKAAAG 120 SQPPPPPSST HNGAGVPVGY GMYGAGGGSG MIMMMGQPMY PPAASSGYSQ QPPHHQMSMG 180 GKGGAYGHCD GSSSSPSGLR RHDGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-49 | 19 | 111 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.67900 | 1e-176 | endosperm| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G180947 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G180947_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT017830 | 1e-174 | BT017830.1 Zea mays clone EL01N0508H10.c mRNA sequence. | |||
GenBank | EU956383 | 1e-174 | EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670554.1 | 1e-151 | nuclear transcription factor Y subunit B-10 | ||||
Swissprot | Q75IZ7 | 5e-74 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A1D6F122 | 1e-150 | A0A1D6F122_MAIZE; Nuclear transcription factor Y subunit B-2 | ||||
STRING | GRMZM2G180947_P01 | 1e-150 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 3e-70 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G180947_P01 |
Entrez Gene | 103647828 |
Publications ? help Back to Top | |||
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