PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180452_P01
Common NameLOC100381413
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 275aa    MW: 30894 Da    PI: 8.1421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180452_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12137185355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  GRMZM2G180452_P01 137 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 185
                        58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.53E-10132189No hitNo description
SuperFamilySSF474591.96E-17132197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9137185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-10140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMYSPPRTDP DREEEQCFSI GSMQEGVQLY SSTGDAQLNR NMNTGKCLED GKRKGSGEDS  60
SSLRSLVRKL EASIAFSHRI TLPLFHPTVH VNVLLQGETS ALQREVSMEC ADEKAGDARA  120
KREDYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL VPGCNKITGK AMMLDEIINY  180
VQSLQRQIEF LSMKLSAIGP GLNCDLDLQD ILCTQDASSA FPGYNLQTSN VHINLYRASE  240
EGFSHRNRII PSPANVHVTR NAQLSAFPQV FIRRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180452
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180452_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622160.0BT062216.1 Zea mays full-length cDNA clone ZM_BFb0227P23 mRNA, complete cds.
GenBankKJ7267920.0KJ726792.1 Zea mays clone pUT2278 bHLH transcription factor (bHLH3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681593.10.0putative HLH DNA-binding domain superfamily protein isoform X4
SwissprotQ6NKN94e-43BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A1D6JU860.0A0A1D6JU86_MAIZE; Transcription factor bHLH62
STRINGGRMZM2G180452_P031e-166(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]