PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180406_P01
Common NameLOC100382035
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 460aa    MW: 48549.2 Da    PI: 6.6996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180406_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09262309455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  GRMZM2G180406_P01 262 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 309
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.99E-10256313No hitNo description
SuperFamilySSF474591.28E-16256327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16260326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6262309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDCGPPDQLP PSSAPACFLN LNWDQSMAAA TAGDHLDLVS SPASNSTAAD GLALHGISPQ  60
PQYGGTPLSS PRKLNLSMMG QFHHYPPMGH LDQFLADPGF AARAARLSGF DGRPGGSGYG  120
GAVPGQFGLP DAGPIGGALR ELELGNGRDE SSVSDPASAS AEMALKAPSD GNAKKRKASG  180
KGKGKDGPGS TAATKEESSG KRCKSAEESN GAEENSGKGK AAAQSNSDNG GKKQGKDGAS  240
KPPEPPKDYI HVRARRGEAT DSHSLAERVR REKISQRMKL LQDLVPGCNK VVGKAVMLDE  300
IINYVQSLQR QVEFLSMKLA TVNPQLDFNN LPNLLPKDMH QSCGPLQNSH FPLETSGAPL  360
PYLNQGNPLI GCGLPNGMDN SQSSMHPLDP AFCRPMSSQQ HPFLNGVSDA ASKVGTFWQD  420
DLQSVVHMDM GQQSQQEMAP TSSNSYNDGS LQTVHMKMEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1227110.0meristem| sheath| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180406
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180406_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430140.0BT043014.1 Zea mays full-length cDNA clone ZM_BFc0080E09 mRNA, complete cds.
GenBankBT0629560.0BT062956.1 Zea mays full-length cDNA clone ZM_BFc0012J20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168271.10.0uncharacterized LOC100278938
TrEMBLB4G0X60.0B4G0X6_MAIZE; Transcription factor bHLH62
STRINGGRMZM2G180406_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-59bHLH family protein