PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G180328_P01

Common Name

LOC100216773, NAC20, SNAC052

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NAC

Protein Properties

Length: 339aa MW: 35805.5 Da PI: 9.3501

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G180328_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.2	2.2e-51	22	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelvv+yL+++++g ++++ +i+evd+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v GRMZM2G180328_P01 22 LPPGFRFHPTDEELVVHYLCRRCAGLPISV-PIIAEVDLYKHDPWQLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGADKPV 112 79**************************.88***********7666789********************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + v +kk Lvfy g+apkg kt+W+mheyrl GRMZM2G180328_P01 113 GT--PKPVAIKKALVFYAGKAPKGDKTNWIMHEYRL 146 98..789*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-61	16	173	IPR003441	NAC domain
PROSITE profile	PS51005	59.081	22	173	IPR003441	NAC domain
Pfam	PF02365	4.3E-26	23	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020126	anatomy	tassel inflorescence
PO:0001009	developmental stage	D pollen mother cell meiosis stage
PO:0007072	developmental stage	LP.18 eighteen leaves visible stage

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSSGGGGRVP AAAAAQSQEL QLPPGFRFHP TDEELVVHYL CRRCAGLPIS VPIIAEVDLY 60 KHDPWQLPRM ALYGEKEWYF FSPRDRKYPN GSRPNRAAGA GYWKATGADK PVGTPKPVAI 120 KKALVFYAGK APKGDKTNWI MHEYRLADVD RTARKKNNSL RLDDWVLCRI YNKKGALEKP 180 TGAGGRAEAS SQGALGSMSM GSPPEQKPSV LPSATATATA AAGTGYAPLP FSELAAYYEV 240 RPSDSMPRAH GADSSCSGHA LAATSSCGGG GGERPEVQSQ PKIAEWERTF AAGAGPGINP 300 AGSMLGLGGH QLGSAAVGVG LPAGDPLLQD ILTYWGKPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-78	19	179	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-78	19	179	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-78	19	179	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-78	19	179	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-78	19	179	17	174	NAC domain-containing protein 19
3swm_B	1e-78	19	179	17	174	NAC domain-containing protein 19
3swm_C	1e-78	19	179	17	174	NAC domain-containing protein 19
3swm_D	1e-78	19	179	17	174	NAC domain-containing protein 19
3swp_A	1e-78	19	179	17	174	NAC domain-containing protein 19
3swp_B	1e-78	19	179	17	174	NAC domain-containing protein 19
3swp_C	1e-78	19	179	17	174	NAC domain-containing protein 19
3swp_D	1e-78	19	179	17	174	NAC domain-containing protein 19
4dul_A	1e-78	19	179	14	171	NAC domain-containing protein 19
4dul_B	1e-78	19	179	14	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G180328

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:10660065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269\|PubMed:17587305, ECO:0000269\|PubMed:18273684, ECO:0000269\|PubMed:19453457, ECO:0000269\|PubMed:20632034, ECO:0000269\|PubMed:27892643}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G180328_P01

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269\|PubMed:11332734, ECO:0000269\|PubMed:20632034, ECO:0000269\|PubMed:27892643}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037323	0.0	BT037323.1 Zea mays full-length cDNA clone ZM_BFb0162P01 mRNA, complete cds.
GenBank	KM987612	0.0	KM987612.1 Zea mays NAC protein (SNAC052) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136644.1	0.0	uncharacterized protein LOC100216773
Swissprot	Q7F2L3	1e-144	NAC48_ORYSJ; NAC domain-containing protein 48
TrEMBL	B4FJN5	0.0	B4FJN5_MAIZE; NAC domain containing protein 32
STRING	GRMZM2G180328_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3417	37	82
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-114	NAC family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G180328_P01
Entrez Gene	100216773

Publications ? help Back to Top
Xiong L,Lee MW,Qi M,Yang Y Identification of defense-related rice genes by suppression subtractive hybridization and differential screening. Mol. Plant Microbe Interact., 2001. 14(5): p. 685-92 [PMID:11332734] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ohnishi T, et al. OsNAC6, a member of the NAC gene family, is induced by various stresses in rice. Genes Genet. Syst., 2005. 80(2): p. 135-9 [PMID:16172526] Hu H, et al. Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice. Plant Mol. Biol., 2008. 67(1-2): p. 169-81 [PMID:18273684] Kim MJ, et al. Quadruple 9-mer-based protein binding microarray with DsRed fusion protein. BMC Mol. Biol., 2009. 10: p. 91 [PMID:19761621] Chung PJ,Kim JK Epigenetic interaction of OsHDAC1 with the OsNAC6 gene promoter regulates rice root growth. Plant Signal Behav, 2009. 4(7): p. 675-7 [PMID:19820307] Peng HF, et al. Fine mapping of a gene for non-pollen type thermosensitive genic male sterility in rice (Oryza sativa L.). Theor. Appl. Genet., 2010. 120(5): p. 1013-20 [PMID:20012261] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Kim MJ, et al. Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein. Methods Mol. Biol., 2012. 786: p. 65-77 [PMID:21938620] Gupta SK, et al. The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice. J. Exp. Bot., 2012. 63(2): p. 757-72 [PMID:22058403] Nakashima K, et al. Comparative functional analysis of six drought-responsive promoters in transgenic rice. Planta, 2014. 239(1): p. 47-60 [PMID:24062085] Todaka D,Nakashima K,Shinozaki K,Yamaguchi-Shinozaki K Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice. Rice (N Y), 2012. 5(1): p. 6 [PMID:24764506] Qian B, et al. Enhanced drought tolerance in transgenic rice over-expressing of maize C4 phosphoenolpyruvate carboxylase gene via NO and Ca(2+). J. Plant Physiol., 2015. 175: p. 9-20 [PMID:25460871] Shiriga K, et al. Genome-wide identification and expression pattern of drought-responsive members of the NAC family in maize. Meta Gene, 2014. 2: p. 407-17 [PMID:25606426] Lu M,Sun QP,Zhang DF,Wang TY,Pan JB Identification of 7 stress-related NAC transcription factor members in maize (Zea mays L.) and characterization of the expression pattern of these genes. Biochem. Biophys. Res. Commun., 2015. 462(2): p. 144-50 [PMID:25937463] Farooq MA,Detterbeck A,Clemens S,Dietz KJ Silicon-induced reversibility of cadmium toxicity in rice. J. Exp. Bot., 2016. 67(11): p. 3573-85 [PMID:27122572] Lee DK, et al. The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance. Plant Biotechnol. J., 2017. 15(6): p. 754-764 [PMID:27892643]