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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G180190_P01 |
| Common Name | LOC103645994 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
LFY |
| Protein Properties |
Length: 394aa MW: 42575.4 Da PI: 9.4543 |
| Description |
LFY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G180190_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FLO_LFY | 534.2 | 4.8e-163 | 1 | 382 | 1 | 386 |
FLO_LFY 1 mdpea.fsas.lfkwd...praaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeeld 87
mdp++ fsa+ f+wd p++aa ++ ++ap+ +a + rele+l+ +yGvr +tva+i+elGft+stL++m+++eld
GRMZM2G180190_P01 1 MDPNDaFSAAhPFRWDlgpPAPAA------PAPPPPPPPAPQLLPHAPLLSAPRELEDLVAGYGVRPSTVARISELGFTASTLLGMTERELD 86
777654876659****54322222......222222233333333444556689************************************** PP
FLO_LFY 88 dlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaee. 178
d+m++l+ +fr+d+l+Ger+G++aa+raer r+++ r ++ ++lda+sqe+ls+e++ aa+sgg +gea+ ++++
GRMZM2G180190_P01 87 DMMAALAGLFRWDVLLGERFGLRAALRAERGRVMSLG---GRF-----HTGSTLDAASQEVLSDERD-----AAASGGLAEGEAGRRMVTAg 165
**********************************955...555.....36789***********987.....56666666666666665553 PP
FLO_LFY 179 kkseeekkkaskk.kqkrkkkkelkseededeeeeededeeg........sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCre 261
kk+ ++ a+k k++rkk+ + d++++ +ed + g +g++g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr
GRMZM2G180190_P01 166 KKKGKKGVGARKGkKARRKKELRPLDVLDDENDGDEDGGGGGsdstessaGGSGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRV 257
44444444443431333333333333344444444433332244555555888999************************************ PP
FLO_LFY 262 fLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgw 353
fLlqvq++ak G+k+Ptkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeasnalrra+k+rgenvGawrqacy+plv+iaar+g+
GRMZM2G180190_P01 258 FLLQVQSLAKLGGHKSPTKVTNQVFRYAKKCGASYINKPKMRHYVHCYALHCLDEEASNALRRAYKARGENVGAWRQACYAPLVEIAARHGF 349
******************************************************************************************** PP
FLO_LFY 354 didavfnahprLsiWYvPtkLrqLChlerskas 386
didavf+ahprL+iWYvPt+LrqLCh++r +++
GRMZM2G180190_P01 350 DIDAVFSAHPRLTIWYVPTRLRQLCHQARGSHA 382
*****************************9876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MDPNDAFSAA HPFRWDLGPP APAAPAPPPP PPPAPQLLPH APLLSAPREL EDLVAGYGVR 60
PSTVARISEL GFTASTLLGM TERELDDMMA ALAGLFRWDV LLGERFGLRA ALRAERGRVM 120
SLGGRFHTGS TLDAASQEVL SDERDAAASG GLAEGEAGRR MVTAGKKKGK KGVGARKGKK 180
ARRKKELRPL DVLDDENDGD EDGGGGGSDS TESSAGGSGG GERQREHPFV VTEPGEVARA 240
KKNGLDYLFH LYEQCRVFLL QVQSLAKLGG HKSPTKVTNQ VFRYAKKCGA SYINKPKMRH 300
YVHCYALHCL DEEASNALRR AYKARGENVG AWRQACYAPL VEIAARHGFD IDAVFSAHPR 360
LTIWYVPTRL RQLCHQARGS HAHAAAGLPP PPMF
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 165 | 184 | KKKGKKGVGARKGKKARRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In the vegetative phase, expressed in shoot meristems and leaf primordia. In the reproductive phase, present in the meristems of primary and secondary branches at primordial and elongating stages, but later transiently down-regulated from the meristems, when the meristem identity change from inflorescence to spikelet. Subsequent expression recovery when spikelets are differentiated, with an accumulation in floral meristems and in primordia of all floral organs, including lodicules, stamens, carpels and ovules. {ECO:0000269|PubMed:21910771}. |
| Uniprot | TISSUE SPECIFICITY: In very young panicle but not in mature florets, mature leaves, roots or apical meristems. {ECO:0000269|PubMed:9482818}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY179882 | 0.0 | AY179882.1 Zea mays cultivar A632 floricaula/leafy-like 1 (fl1) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G61850.1 | 8e-98 | floral meristem identity control protein LEAFY (LFY) |
