PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179885_P03
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 410aa    MW: 43556.9 Da    PI: 7.4479
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179885_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.3e-54271551128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  GRMZM2G179885_P03  27 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-AIIAEVDLYKFDPWELPDKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 117
                        79****************************.88***************8888999************************************* PP

                NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
  GRMZM2G179885_P03 118 MASggNREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 155
                        **9888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-6424192IPR003441NAC domain
PROSITE profilePS5100561.97927192IPR003441NAC domain
PfamPF023659.6E-2828155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MRSMESTDSS SGELPPPQKQ PSSAPDLPPG FRFHPTDEEL VVHYLKKKAA SVPLPVAIIA  60
EVDLYKFDPW ELPDKATFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPIMAS  120
GGNREKVGVK KALVFYRGKP PKGLKTNWIM HEYRLADAAS STTSRPPPPC NAGGKATSLR  180
LDDWVLCRIY KKIDKLGVGD PPRIMECGED SVENAVAAYP THAAAAAMAV AVAGGGGAYH  240
TGNYTSLIHH HHEDSFLVDG LLTAEDAGGS SLSQLAAAAR AAAPTDTTKQ LLVPSSTTPF  300
NWLDASALTI LPPAKRFHGY NRDTTDGGGT SLPSPSERNN LQAAVGAVDS GASGGTSAVI  360
PSFLNPLGVQ GATSYHHHAI FGTPVTPEAA AAAACSFQHP YQLSGVNWNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-732119214168NAC domain-containing protein 19
3swm_B7e-732119214168NAC domain-containing protein 19
3swm_C7e-732119214168NAC domain-containing protein 19
3swm_D7e-732119214168NAC domain-containing protein 19
3swp_A7e-732119214168NAC domain-containing protein 19
3swp_B7e-732119214168NAC domain-containing protein 19
3swp_C7e-732119214168NAC domain-containing protein 19
3swp_D7e-732119214168NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179885
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179885_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9753030.0EU975303.1 Zea mays clone 486889 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336883.10.0uncharacterized LOC100279608
SwissprotA0SPJ91e-176NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLA0A0H4KD060.0A0A0H4KD06_MAIZE; NAC transcription factor
STRINGGRMZM2G179885_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-90NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]