PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G179885_P01

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NAC

Protein Properties

Length: 359aa MW: 37788.4 Da PI: 8.2827

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G179885_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.3	1.4e-31	27	104	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl GRMZM2G179885_P01 27 FGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASggNREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 104 4789************************************9888888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.005	1	141	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-37	24	141	IPR003441	NAC domain
Pfam	PF02365	4.3E-15	30	104	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009753	Biological Process	response to jasmonic acid
GO:0045995	Biological Process	regulation of embryonic development
GO:0048317	Biological Process	seed morphogenesis
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MCLTILTHCV AAWTCMVGYS GSDKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT 60 GTDKPIMASG GNREKVGVKK ALVFYRGKPP KGLKTNWIMH EYRLADAASS TTSRPPPPCN 120 AGGKATSLRL DDWVLCRIYK KIDKLGVGDP PRIMECGEDS VENAVAAYPT HAAAAAMAVA 180 VAGGGGAYHT GNYTSLIHHH HEDSFLVDGL LTAEDAGGSS LSQLAAAARA AAPTDTTKQL 240 LVPSSTTPFN WLDASALTIL PPAKRFHGYN RDTTDGGGTS LPSPSERNNL QAAVGAVDSG 300 ASGGTSAVIP SFLNPLGVQG ATSYHHHAIF GTPVTPEAAA AAACSFQHPY QLSGVNWNP

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MCLTILTHCV AAWTCMVGYS GSDKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT  60
GTDKPIMASG GNREKVGVKK ALVFYRGKPP KGLKTNWIMH EYRLADAASS TTSRPPPPCN  120
AGGKATSLRL DDWVLCRIYK KIDKLGVGDP PRIMECGEDS VENAVAAYPT HAAAAAMAVA  180
VAGGGGAYHT GNYTSLIHHH HEDSFLVDGL LTAEDAGGSS LSQLAAAARA AAPTDTTKQL  240
LVPSSTTPFN WLDASALTIL PPAKRFHGYN RDTTDGGGTS LPSPSERNNL QAAVGAVDSG  300
ASGGTSAVIP SFLNPLGVQG ATSYHHHAIF GTPVTPEAAA AAACSFQHPY QLSGVNWNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-45	23	141	64	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-45	23	141	64	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-45	23	141	64	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-45	23	141	64	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-45	23	141	67	168	NAC domain-containing protein 19
3swm_B	3e-45	23	141	67	168	NAC domain-containing protein 19
3swm_C	3e-45	23	141	67	168	NAC domain-containing protein 19
3swm_D	3e-45	23	141	67	168	NAC domain-containing protein 19
3swp_A	3e-45	23	141	67	168	NAC domain-containing protein 19
3swp_B	3e-45	23	141	67	168	NAC domain-containing protein 19
3swp_C	3e-45	23	141	67	168	NAC domain-containing protein 19
3swp_D	3e-45	23	141	67	168	NAC domain-containing protein 19
4dul_A	3e-45	23	141	64	165	NAC domain-containing protein 19
4dul_B	3e-45	23	141	64	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G179885

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00361	DAP	Transfer from AT3G15510	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G179885_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975303	0.0	EU975303.1 Zea mays clone 486889 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001336883.1	0.0	uncharacterized LOC100279608
Swissprot	A0SPJ9	1e-136	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A0H4K7V5	0.0	A0A0H4K7V5_MAIZE; NAC transcription factor
STRING	GRMZM2G179885_P02	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-57	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	GRMZM2G179885_P01

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]