PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179802_P02
Common Namecl29574_1(465)
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 528aa    MW: 58138.6 Da    PI: 5.7821
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179802_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-34691602101
                        HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
       HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                        Fl k+ye+++d++ + ++sws ++  sfvv+++ efa ++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F kg+k+
  GRMZM2G179802_P02  69 FLLKTYEMVDDPSSDAVVSWSdASDGSFVVWNQPEFAARMLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEYFVKGQKH 151
                        9********************66669****************************************999.........************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  93 llekikrkk 101
                        ll++i+r+k
  GRMZM2G179802_P02 152 LLKNIHRRK 160
                        *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-3665159IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-5865159IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.63E-3365159IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-3069159IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-186992IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-18108120IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340109133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-18121133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MVTNPSPRGR GDSPLHLGVG IHQPSPTRSR QQAAAAARAA AAPVMEVAGA REPGSGGGGG  60
GGGGGPAPFL LKTYEMVDDP SSDAVVSWSD ASDGSFVVWN QPEFAARMLP TYFKHNNFSS  120
FIRQLNTYGF RKIDPERWEF ANEYFVKGQK HLLKNIHRRK PIHSHSHQPG ALPDNERALF  180
EDEIDRLSRE KAALQADLWK FNQQQSGAVN QLEDLERRVL DMEQRQTKML SFLQQARKNP  240
QFVRKLVKMA EESPIFADAF HKKRRLPGLE CITDATETAT SFFDDHSSSS RQEMGNLLNQ  300
HFSDKLKLGL CPAMAESNLI TLSTQSSHED NGSPLGKHPD YERTGMECLP LVPQMMELSD  360
TGTSICPSKS VSFTTAANDD GFLPCHLNLS LASCPMDVVR SQIPDANVNT VDEKDGPPEV  420
TTPTMEKDDG MPDRCHDATQ NQKEASGHAG AAADATGRPH RGSQAPPEEH TGPQVVVNDK  480
FWEQFLTERP GCPEAEEASF TLRRDPDHTH AYDEGTGSDT RDMGQLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-236015917129Heat shock factor protein 1
5d5v_B8e-236015917129Heat shock factor protein 1
5d5v_D8e-236015917129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.760500.0embryo| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179802
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179802_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424090.0BT042409.1 Zea mays full-length cDNA clone ZM_BFb0221P10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141978.10.0uncharacterized LOC100274128
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A1D6H8P40.0A0A1D6H8P4_MAIZE; Heat stress transcription factor A-5
STRINGGRMZM2G179802_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Representative plantOGRP97161012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-112HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]