PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G179677_P03

Common Name

gpm243b, LOC100856999

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

C2H2

Protein Properties

Length: 546aa MW: 57197.7 Da PI: 9.2839

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G179677_P03	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H GRMZM2G179677_P03 71 FVCEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	13.2	0.00027	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GRMZM2G179677_P03 147 WKCDKCNKRYAVQSDWKAHSKTC 169 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.84E-7	70	93	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.5E-6	70	93	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	3.5E-5	71	93	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	71	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0041	71	93	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	300	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.0E-5	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.84E-7	142	167	No hit	No description
SMART	SM00355	110	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MAAASSAHLF GLGDGQMQMQ PQQQQAPPPP LVNNPAAPPP KKKRNQPGNP TDPDAEVIAL 60 SPKTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKETRRR VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYCR KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARVPPMGA GMYGTGGMAL GLSGMATSQL QSFQDQTHSS 240 ATTAISNNPT AQFEHLMQSS TGSPVFRGAQ PTSSSSSPFY LGGAEDGHQS LSGHTSLLHG 300 NKQAYHGLML LPEQQHQAGS NGLLNLGFFS GGSSGQDARL VFPDQFNGAV GGNVRGDGSE 360 HGNSGANTES AAIFSGNLMG NHQMASSAGF SSSLYNSSET AAPAQMSATA LLQKAAQMGA 420 TTSSGNVNSL LRGLGSSAGG TLNGRPAGAA AGFMAGESSS ARSTSQAENE SQFRDLMNTL 480 AASGSGAAGT AFSGGFPGMD DSKLSTRDFL GVGGSVVRSM GGAAGLPLRH GGAAGIGMGS 540 LDTEMK

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MAAASSAHLF GLGDGQMQMQ PQQQQAPPPP LVNNPAAPPP KKKRNQPGNP TDPDAEVIAL  60
SPKTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKETRRR VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYCR KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARVPPMGA GMYGTGGMAL GLSGMATSQL QSFQDQTHSS  240
ATTAISNNPT AQFEHLMQSS TGSPVFRGAQ PTSSSSSPFY LGGAEDGHQS LSGHTSLLHG  300
NKQAYHGLML LPEQQHQAGS NGLLNLGFFS GGSSGQDARL VFPDQFNGAV GGNVRGDGSE  360
HGNSGANTES AAIFSGNLMG NHQMASSAGF SSSLYNSSET AAPAQMSATA LLQKAAQMGA  420
TTSSGNVNSL LRGLGSSAGG TLNGRPAGAA AGFMAGESSS ARSTSQAENE SQFRDLMNTL  480
AASGSGAAGT AFSGGFPGMD DSKLSTRDFL GVGGSVVRSM GGAAGLPLRH GGAAGIGMGS  540
LDTEMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	143	208	3	68	Zinc finger protein JACKDAW
5b3h_F	1e-33	143	208	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G179677

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G179677_P03

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT053956	0.0	BT053956.1 Zea mays full-length cDNA clone ZM_BFc0072P10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008648994.1	0.0	uncharacterized protein LOC542697 isoform X5
Refseq	XP_008649003.1	0.0	uncharacterized protein LOC542697 isoform X5
Refseq	XP_020396172.1	0.0	uncharacterized protein LOC542697 isoform X5
TrEMBL	Q5UDB5	0.0	Q5UDB5_MAIZE; INDETERMINATE-related protein 1
STRING	GRMZM2G179677_P02	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-107	indeterminate(ID)-domain 4

Link Out ? help Back to Top
Phytozome	GRMZM2G179677_P03
Entrez Gene	542697

Publications ? help Back to Top
Colasanti J, et al. The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants. BMC Genomics, 2006. 7: p. 158 [PMID:16784536] Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034]