PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179677_P01
Common Namegpm243b, LOC100856999
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 543aa    MW: 56899.4 Da    PI: 9.2839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179677_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056890123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k F r  nL+ H r H
  GRMZM2G179677_P01 68 FVCEVCNKGFQREQNLQLHRRGH 90
                       89*******************88 PP
2zf-C2H213.20.00027144166123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  GRMZM2G179677_P01 144 WKCDKCNKRYAVQSDWKAHSKTC 166
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-76790No hitNo description
Gene3DG3DSA:3.30.160.607.4E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0946890IPR007087Zinc finger, C2H2
SMARTSM003550.00416890IPR015880Zinc finger, C2H2-like
PfamPF121713.5E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355300109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-7139164No hitNo description
SMARTSM00355110144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAAASSAHLF GLGDGQMQMQ PQQQQAPPPP LVNNPAAPPP KKKRNQPADP DAEVIALSPK  60
TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKETRRRVYL CPEPTCVHHD  120
PSRALGDLTG IKKHYCRKHG EKKWKCDKCN KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAQESA RVPPMGAGMY GTGGMALGLS GMATSQLQSF QDQTHSSATT  240
AISNNPTAQF EHLMQSSTGS PVFRGAQPTS SSSSPFYLGG AEDGHQSLSG HTSLLHGNKQ  300
AYHGLMLLPE QQHQAGSNGL LNLGFFSGGS SGQDARLVFP DQFNGAVGGN VRGDGSEHGN  360
SGANTESAAI FSGNLMGNHQ MASSAGFSSS LYNSSETAAP AQMSATALLQ KAAQMGATTS  420
SGNVNSLLRG LGSSAGGTLN GRPAGAAAGF MAGESSSARS TSQAENESQF RDLMNTLAAS  480
GSGAAGTAFS GGFPGMDDSK LSTRDFLGVG GSVVRSMGGA AGLPLRHGGA AGIGMGSLDT  540
EMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33140205368Zinc finger protein JACKDAW
5b3h_F1e-33140205368Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179677
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179677_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539560.0BT053956.1 Zea mays full-length cDNA clone ZM_BFc0072P10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241804.20.0uncharacterized protein LOC542697
SwissprotQ9ZUL31e-121IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1D6KMW50.0A0A1D6KMW5_MAIZE; Indeterminate domain p1
STRINGGRMZM2G179677_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-106indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Colasanti J, et al.
    The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
    BMC Genomics, 2006. 7: p. 158
    [PMID:16784536]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]