PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179366_P01
Common NameLOC100283491
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BBR-BPC
Protein Properties Length: 441aa    MW: 48787.6 Da    PI: 9.2137
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179366_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3344e-10233502301
          GAGA_bind   2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.............rernlalsekkaavaerd...................ma 59 
                        dddgs   rn+g+y+    +k nlglqlmss++ +rd+k+             +++ +   + +++ + rd                   m+
  GRMZM2G179366_P01   3 DDDGSLGiRNWGFYDT---MKGNLGLQLMSSMPpDRDTKPllpragflqqhghHNASH-QLHAQQSQHYRDstcgggasggmpteqhsihMD 90 
                        45677779******86...5************99***********9999866433333.4556677788889******************** PP

          GAGA_bind  60 flqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqledsavelreeekle 133
                        f +++++l+  +++ +++d+k+l+  ++  +                   +++p+g++++s+++++ +++q + e+ql++++    + ++  
  GRMZM2G179366_P01  91 FSRNEAWLHPSHHHQHPHDQKVLHSRPTVPAGHvghpghgshpvhgghivHHHPTGYGSISDAQHTlQMMQPQLESQLQEPPPC--KGDEAP 180
                        ************************998776665688999***********9******999987765166666999999998877..344456 PP

          GAGA_bind 134 alpieeaaeeakekkkkk...krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222
                         +pie++  +++  + kk    +q++++pk++k kk+kk  ++  +  + +++ +r++ +kk +++v+ng++lD ++lP+PvCsCtG+++qC
  GRMZM2G179366_P01 181 PPPIEDHSVVSTGPPVKKrqrGQQQSRQPKSPKPKKPKKV-AVLPEGGALNGHAPRRRGPKKAVGMVINGIELDLANLPTPVCSCTGTPQQC 271
                        7777777666655433330003577889999999999995.5666888889988************************************** PP

          GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        Y+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l np+DLk++WAkHGtnkfvtir
  GRMZM2G179366_P01 272 YRWGAGGWQSACCTTAISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLVNPIDLKTFWAKHGTNKFVTIR 350
                        ******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.0E-1781350IPR010409GAGA-binding transcriptional activator
PfamPF062171.0E-1123350IPR010409GAGA-binding transcriptional activator
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDDDDGSLGI RNWGFYDTMK GNLGLQLMSS MPPDRDTKPL LPRAGFLQQH GHHNASHQLH  60
AQQSQHYRDS TCGGGASGGM PTEQHSIHMD FSRNEAWLHP SHHHQHPHDQ KVLHSRPTVP  120
AGHVGHPGHG SHPVHGGHIV HHHPTGYGSI SDAQHTLQMM QPQLESQLQE PPPCKGDEAP  180
PPPIEDHSVV STGPPVKKRQ RGQQQSRQPK SPKPKKPKKV AVLPEGGALN GHAPRRRGPK  240
KAVGMVINGI ELDLANLPTP VCSCTGTPQQ CYRWGAGGWQ SACCTTAIST YPLPMSTKRR  300
GARIAGRKMS QGAFKKVLEK LAGEGYNLVN PIDLKTFWAK HGTNKFVTIR SCCIFLSSAS  360
CHVAFLQKEC VQNKEVILEL GLFLSDVVVS RMVERCLFQK HFTTCVQVLK SGYDLRSEAD  420
FQQCDKWIHD AVFENLKLIR F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213219PKKPKKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.130180.0ear| embryo| endosperm| meristem| ovary| root| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179366
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179366_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683230.0BT068323.1 Zea mays full-length cDNA clone ZM_BFb0106H14 mRNA, complete cds.
GenBankEU9649220.0EU964922.1 Zea mays clone 282567 GAGA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149863.10.0uncharacterized protein LOC100283491
RefseqXP_023158048.10.0GAGA-binding protein isoform X1
SwissprotQ8GUC31e-131BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A317YI590.0A0A317YI59_MAIZE; Protein Barley B recombinant
STRINGGRMZM2G179366_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.23e-60basic pentacysteine1