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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G179325_P01 |
Common Name | LOC103640045, Zm.93152 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
GRAS |
Protein Properties |
Length: 721aa MW: 79879 Da PI: 4.8103 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G179325_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 359.1 | 6.5e-110 | 341 | 712 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
l++lL++cA+av+s+d + a++lL +++++asp+gd++qRla++f+e+L+arla+++s +y++l +++ts ++ l+a++l+ + + +
GRMZM2G179325_P01 341 LRTLLVHCAQAVASDDRRSATELLRQIKQHASPQGDATQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AADILQAYQLYMAAICFKR 429
6789************************************************************999998...9****************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
+ ++ N++I++a+ g+ ++Hi+D++i +G+QWp++l+ +a+R++gpp++RiTg++ p++g ++++eetg+rL+k+A+++gvpf++++++
GRMZM2G179325_P01 430 VVFVFSNNTIYNAALGKMKIHIVDYGIHYGFQWPCFLRWIADREGGPPEVRITGIDLPQPGfrPTQRIEETGRRLSKYAQQFGVPFKYQAIA 521
************************************************************9******************************* PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
a+++e+++ e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++P+ ++++ + + +++ F++rf eal +ysalfd+l+++
GRMZM2G179325_P01 522 ASKMESIRAEDLNLDPEEVLIVNCLYQFKNLMDESVVIESPRDIVLNNIRKMRPHTFIHAIVNGSFSAPFFVTRFREALFFYSALFDALDTT 613
******************************************************************************************** PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
pr+s++r+ +E+ l+gr++ nv+aceg++r+er et+++W+ r ++aG+k+ pl+ ++++ ++ +r + + + ++ ++++l++gWk+r
GRMZM2G179325_P01 614 TPRDSNQRMLIEENLFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQQPLNPDVVQVVRNKVRDLYHKDFVIDIDHHWLLQGWKGRI 705
***********************************************************************888****************** PP
GRAS 367 LvsvSaW 373
L+++S W
GRMZM2G179325_P01 706 LYAISTW 712
******* PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 721 aa
Download sequence Send
to blast |
MGSSYDPYPS PAADDLFLYL SDLGPASPSA YLDLPPTPQP QPYPQSQQQQ QGSKGPTQDM 60 LLPYISSMLM EDDIDDTFFY DYPDNPALLQ AQQSFLDILS DDASSPTTTT GTTNSSASVN 120 HSSSDASASA PLTPAAVDSY SPAPAVQFDG FDLDPAAFFS NGANSDLMSS AFLKGMEEAN 180 KFLPSEDKLV IDLDPPDDPK RFVLPTRAAE NLAPGFNAAA ATTAPAAVAM AVKEEEVILA 240 APDAALGSGG VVLGRGRRNR LDDDEEDLEL QRRSSKQSAL QGDGDERDVF EKYIMTCPET 300 CTEQMQQLRI AMQEEAAKEA AVAAGNGKAK GRRGGREVVD LRTLLVHCAQ AVASDDRRSA 360 TELLRQIKQH ASPQGDATQR LAHCFAEGLQ ARLAGTGSMV YQSLMAKRTS AADILQAYQL 420 YMAAICFKRV VFVFSNNTIY NAALGKMKIH IVDYGIHYGF QWPCFLRWIA DREGGPPEVR 480 ITGIDLPQPG FRPTQRIEET GRRLSKYAQQ FGVPFKYQAI AASKMESIRA EDLNLDPEEV 540 LIVNCLYQFK NLMDESVVIE SPRDIVLNNI RKMRPHTFIH AIVNGSFSAP FFVTRFREAL 600 FFYSALFDAL DTTTPRDSNQ RMLIEENLFG RAALNVIACE GTDRVERPET YKQWQVRNQR 660 AGLKQQPLNP DVVQVVRNKV RDLYHKDFVI DIDHHWLLQG WKGRILYAIS TWVANDAPSY 720 F
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727758 | 0.0 | KJ727758.1 Zea mays clone pUT5702 GRAS transcription factor (GRAS50) mRNA, partial cds. |