PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179049_P02
Common NameNAC35, Zm.24865
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 285aa    MW: 30510.6 Da    PI: 10.4877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179049_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.45.9e-36111461128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeelvv yL++k+ +++l++  vi+ v d+  ++PwdLp    a+e e yfFs r+  ++ +g+r++r + sgyWkatgk++
  GRMZM2G179049_P02  11 LPPGFRFHPTDEELVVLYLRRKALARPLPA-AVIPVVhDVAGLDPWDLPG---ASEGEGYFFSLRRAPATgRGSRRRR-AGSGYWKATGKEE 97 
                        79****************************.8899998***********3...3566889999988766624666666.699********** PP

                NAM  91 evlsk.........kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        +v+ +         ++ lvg k+ L+f++   + p++++t Wvmheyrl
  GRMZM2G179049_P02  98 PVFLQcggggvggkRQLLVGGKTALAFHRSepSPPSSSRTGWVMHEYRL 146
                        ****99887776544445**********6534889999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-437181IPR003441NAC domain
PROSITE profilePS5100544.89311181IPR003441NAC domain
PfamPF023659.6E-2312146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MERPAQAPTQ LPPGFRFHPT DEELVVLYLR RKALARPLPA AVIPVVHDVA GLDPWDLPGA  60
SEGEGYFFSL RRAPATGRGS RRRRAGSGYW KATGKEEPVF LQCGGGGVGG KRQLLVGGKT  120
ALAFHRSEPS PPSSSRTGWV MHEYRLAAAS RGVAEQRKKN ASHGCCDAEP GEWVVCRVFL  180
KKGARRSRPG RDGNHSRALR HRASAAPPQL REGVGGRQPL LFPAPQSPSS SCVTGVTDLS  240
DEEDEVSSGS ITRVCTSERG LMGILSVPSP LSHGPVAQPF SGTIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-281118417168NO APICAL MERISTEM PROTEIN
1ut4_B2e-281118417168NO APICAL MERISTEM PROTEIN
1ut7_A2e-281118417168NO APICAL MERISTEM PROTEIN
1ut7_B2e-281118417168NO APICAL MERISTEM PROTEIN
3swm_A2e-281118420171NAC domain-containing protein 19
3swm_B2e-281118420171NAC domain-containing protein 19
3swm_C2e-281118420171NAC domain-containing protein 19
3swm_D2e-281118420171NAC domain-containing protein 19
3swp_A2e-281118420171NAC domain-containing protein 19
3swp_B2e-281118420171NAC domain-containing protein 19
3swp_C2e-281118420171NAC domain-containing protein 19
3swp_D2e-281118420171NAC domain-containing protein 19
4dul_A2e-281118417168NAC domain-containing protein 19
4dul_B2e-281118417168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.248650.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179049
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179049_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277610.0KJ727761.1 Zea mays clone pUT5706 NAC transcription factor (NAC35) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307391.10.0uncharacterized protein LOC107275227
TrEMBLA0A060D1770.0A0A060D177_MAIZE; NAC transcription factor (Fragment)
STRINGGRMZM2G179049_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Representative plantOGRP1312545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.13e-24NAC family protein